| Literature DB >> 34165178 |
Wei Sun1, Huandi Zhou1, Xuetao Han1, Liubing Hou1, Xiaoying Xue1.
Abstract
With the rapid development of sequencing technologies, the characteristics and functions of circular RNAs (circRNAs) in different tissues, and their underlying pathophysiological mechanisms, have been identified. circRNAs are significantly enriched in the brain and are continually expressed from the embryonic stage to the adult stage in rats. Previous studies have reported that certain circRNAs are differentially expressed in glioma and regulate a number of biological processes, such as cell proliferation, metastasis and oncogenesis of glioma. Furthermore, certain circRNAs have been associated with tumor size, World Health Organization tumor grade and poor prognosis in patients with glioma. It has been hypothesized that circRNAs may be involved in the onset and progression of glioma through transcriptional regulation, protein translation and binding to microRNAs. These properties and functions suggest the potential of circRNAs as prognostic biomarkers and therapeutic targets for glioma. For the present review, published studies were examined from PubMed, Embase, Cochrane Central and the reference lists of the retrieved articles. The aim of the present review was to summarize the progress of circRNA research in glioma, discuss the potential diagnostic and prognostic values, and the roles of circRNAs in glioma, and provide a novel theoretical basis and research concepts for the prediction, diagnosis and treatment of glioma.Entities:
Keywords: biomarker; circRNAs; glioma; miRNA sponges; targeted therapy
Year: 2021 PMID: 34165178 PMCID: PMC8240176 DOI: 10.3892/mmr.2021.12240
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Figure 1.Biogenesis of circRNAs. (A) Pre-mRNA contains introns and exons, and can generate a variety of circRNAs through different splicing mechanisms. (B) Lariat-driven cyclization. When a pre-mRNA is spliced, the 3′ hydroxyl of the upstream exon interacts with the 5′ phosphate of the downstream exon to form a covalent linkage, producing a lariat that contains exons and introns. The 2′ hydroxyl of the 5′ intron reacts with the 5′ phosphate of the 3′ intron, followed by an interaction between the 3′ hydroxyl of the 3′ exon and the 5′ phosphate of the 5′ exon, through which an ecircRNA is formed. (C) RBP-driven cyclization. RBPs can promote the interaction of the downstream intron and upstream intron, causing the formation of an ecircRNA. (D) Base-pairing-driven cyclization. The downstream introns and upstream introns are paired based on inverse-repeating or complementary sequences. The introns are removed or retained to form ecircRNA or EIciRNA. (E) Biosynthesis of ciRNA. Formation of ciRNAs mainly depends on a 7-nt GU-rich element and an 11-nt C-rich element to escape debranching and exonucleolytic degradation. circRNA, circular RNA; RBP, RNA-binding protein; ecircRNA, exonic circRNA; EIciRNA, exon-intron circRNA; ciRNA, circular intronic RNA.
Upregulated or downregulated circRNAs, and their functions and mechanisms in glioma.
| Authors, year | circRNA | Sample | Expression change | Function | Possible mechanism | (Refs.) |
|---|---|---|---|---|---|---|
| Yang | circ-FBXW7 | Glioma tissues and glioma cells | Down | Tumorigenicity (−) | circ-FBXW7/FBXW7-185aa | ( |
| Xia | circ-AKT3 | Glioma tissues and glioma cells | Down | Tumorigenicity (−) | circ-AKT3/AKT3-174aa | ( |
| Wu | circ-SMO | Glioma tissues and glioma cells | Up | Tumorigenicity (+) | circ-SMO/SMO-193aa | ( |
| Shi | circ-0014359 | Glioma tissues and glioma cells | Up | Proliferation (+) | circ-0014359/miR-153/p-AKTser473 | ( |
| Chen | circ_PTN | Glioma cells | Up | Proliferation (+) | circ_PTN/miR-122/SOX6 | ( |
| Peng | circCPA4 | Glioma tissues and glioma cells | Up | Proliferation (+) Prognosis | circCPA4/let-7/CPA4 | ( |
| He | circ-MAPK4 | Glioma tissues and glioma cells | Up | Apoptosis (−) | circ-MAPK4/miR-125a-3p/p-p38/MAPK | ( |
| Cao | hsa_circ_0037251 | Glioma cells | Up | Apoptosis (−) | hsa_circ_0037251/miR-1229-3p/ mTOR | ( |
| Chi | circRNA-104075 | Glioma cells | Up | Apoptosis (−) | circRNA-104075/Bcl-9 | ( |
| He | circ_002136 | Glioma cells | Up | Angiogenesis (+) | circ_002136/miR-138-5p/SOX13/SPON2 | ( |
| He | circ-DICER1 | Glioma cells | Up | Angiogenesis (+) | circ-DICER1/miR-103a-3p (miR-382-5p)/ZIC4 | ( |
| Liu | circ-ATXN1 | Glioma cells | Up | Angiogenesis (+) | circ-ATXN1/miR-526b-3p/MMP2(VEGFA) | ( |
| Zuo | circ-SMAD7 | Glioma tissues and glioma cells | Up | Migration (+) Invasion (+) | circ-SMAD7/PCNA | ( |
| Yang | circ-POSTN | Glioma tissues and glioma cells | Up | Migration (+) Invasion (+) | Circ-POSTN/miR-1205 | ( |
| Yi | hsa_circ_0034642 | Glioma tissues and glioma cells | Up | Migration (+) Invasion (+) | hsa_circ_0034642/miR-1205/BATF3 | ( |
| Su | circDENND2A | Glioma tissues and glioma cells | Up | Migration (+) Invasion (+) | circDENND2A/miR-625-5p | ( |
| Qu | circ_0079593 | Glioma tissues and glioma cells | Up | Prognosis | circ_0079593 / miR-182 (miR-433) | ( |
| Liu | circCDC45 | Glioma tissues and glioma cells | Up | Prognosis | circCDC45/miR-516b (miR-527) | ( |
| Hua | circCEP128 | Glioma cells | Up | Drug resistance | circCEP128/miR-145-5p/ABCG2 | ( |
| Zhao | circATP8B4 | Glioma cells | Up | Radiosensitivity | circATP8B4/miR-766 | ( |
| Ding | circNFIX | Glioma tissues and glioma cells | Up | Targeted therapy | circNFIX/miR-378e/RPN2 | ( |
circRNA, circular RNA.
Figure 2.Role and regulatory pathways of glioma-related circRNAs. The schematic diagram depicts the known role of circRNAs in glioma progression and the way that circRNAs are involved in microRNA-associated gene regulatory pathways. circRNA, circular RNA.
Databases used for circRNA research.
| Authors, year | Database | URL | Annotation | (Refs.) |
|---|---|---|---|---|
| Glazar | circBase | A circRNA database that contains circRNA information from human, mouse, | ( | |
| Panda | CircInteractome | Predicts binding sites of proteins to circRNAs. Predicts potential binding sites for miRNA-circRNA interactions | ( | |
| Ji | circAtlas | Includes circRNA sequence information for humans and other animals | ( | |
| Vo | MiOncoCirc | Description of targets that can be used for cancer diagnosis or treatment | ( | |
| Fan | CircR2Disease | This tool delivers a broad database for circRNA dysregulation in different diseases | ( | |
| Xia | TSCD | TSCD distinguishes the characteristics of human and mouse tissue-specific circRNAs | ( | |
| Xia | CSCD | This database recognized 272,152 cancer-specific circRNAs from 228 total RNA samples Predicts cellular localization of circRNAs, RNA-binding proteins and variable splicing of related genes | ( |
circRNA, circular RNA; miRNA, microRNA.