| Literature DB >> 34163214 |
Xiaohua Liang1, Shengqiang Dang2.
Abstract
PURPOSE: This study aimed to evaluate the associations between mitochondrial dynamics related genes -MFN1, MFN2 and DRP1 polymorphisms and risk of lung cancer.Entities:
Keywords: MFN1; MFN2; gene polymorphisms; lung cancer; mitochondrial dynamics
Year: 2021 PMID: 34163214 PMCID: PMC8214204 DOI: 10.2147/PGPM.S314860
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
The Basic Information of the Participants
| Characteristics | Case (n=600) | Control (n=600) | χ2/t | |
|---|---|---|---|---|
| Gender (%) | 0.032 | 0.858 | ||
| Male | 384 (64.0) | 381 (63.5) | ||
| Female | 216 (36.0) | 219 (36.5) | ||
| Age | 0.674 | 0.344 | ||
| Mean ±SD | 57.03±10.54 | 56.45±10.64 | ||
| Smoking (%) | 0.032 | 0.858 | ||
| Yes | 381 (63.5) | 378 (63.0) | ||
| No | 219 (36.5) | 222 (37.0) | ||
| Pathological types | ||||
| AC | 278 (46.3) | |||
| SCC | 187 (31.2) | |||
| SCLC | 110 (18.3) | |||
| Others | 25 (4.2) |
Abbreviations: AC, adenocarcinoma; SCC, squamous cell carcinoma; SCLC, small cell lung cancer.
Basic Information and Predicted Functions of Candidate SNPs
| SNP | Gene | Chromosome | Position | Allele | Role | Predicted Functions |
|---|---|---|---|---|---|---|
| rs13098637 | 3 | 179375026 | T>C | Intron | Promoter histone mark, motifs changed, eQTL hits | |
| rs3976523 | 3 | 179381391 | A>C | Intron | Motifs changed, eQTL hits | |
| rs4240897 | 1 | 11982698 | G>A | Intron | Enhancer histone mark, motifs changed, eQTL hits | |
| rs2236058 | 1 | 12002304 | C>G | Intron | Enhancer histone mark, motifs changed, eQTL hits | |
| rs879255685 | 12 | 32731019 | G>A | Missense Variant | Gly362Asp | |
| rs879255689 | 12 | 32722602 | G>A | Missense Variant | Gly379Lys |
Abbreviations: SNP, single nucleotide polymorphism; eQTL, expression quantitative trait locus.
The MAF and HWE of Candidate SNPs Between Lung Cancer Cases and Healthy Controls
| SNP | Gene | MAF-Cases | MAF-Controls | HWE | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs13098637 | 0.20 | 0.15 | 0.87 | 1.368(1.106–1.691) | 0.004* | |
| rs3976523 | 0.36 | 0.33 | 0.78 | 1.138(0.962–1.347) | 0.132 | |
| rs4240897 | 0.26 | 0.34 | 0.93 | 0.681(0.572–0.812) | <0.001* | |
| rs2236058 | 0.45 | 0.53 | 0.41 | 0.718(0.612–0.843) | <0.001* | |
| rs879255685 | 0.20 | 0.18 | 0.10 | 1.107(0.904–1.357) | 0.325 | |
| rs879255689 | 0.20 | 0.16 | 0.44 | 1.348(1.094–1.662) | 0.005* |
Note: *p < 0.05 indicates statistical significance.
Abbreviations: SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy–Weinberg equilibrium.
Genotype Frequency Distributions Between Lung Cancer Cases and Healthy Controls
| SNP | Genotype | Control | Case | OR (95% CI) | |
|---|---|---|---|---|---|
| rs13098637 | T/T | 430 (71.7%) | 387 (64.5%) | 1 | 0.014* |
| T/C | 157 (26.2%) | 189 (31.5%) | 1.34 (1.04–1.73) | ||
| C/C | 13 (2.2%) | 24 (4%) | 2.04 (1.02–4.06) | ||
| rs3976523 | A/A | 269 (44.8%) | 243 (40.5%) | 1 | 0.300 |
| A/C | 268 (44.7%) | 285 (47.5%) | 1.18 (0.92–1.50) | ||
| C/C | 63 (10.5%) | 72 (12%) | 1.26 (0.86–1.85) | ||
| rs4240897 | G/G | 257 (42.8%) | 321 (53.5%) | 1 | <0.001* |
| G/A | 273 (45.5%) | 242 (40.3%) | 0.71 (0.56–0.90) | ||
| A/A | 70 (11.7%) | 37 (6.2%) | 0.42 (0.27–0.64) | ||
| rs2236058 | C/C | 138 (23%) | 179 (29.8%) | 1 | <0.001* |
| C/G | 289 (48.2%) | 306 (51%) | 0.82 (0.62–1.08) | ||
| G/G | 173 (28.8%) | 115 (19.2%) | 0.52 (0.37–0.71) | ||
| rs879255685 | G/G | 393 (65.5%) | 386 (64.3%) | 1 | 0.140 |
| G/A | 193 (32.2%) | 188 (31.3%) | 0.99 (0.77–1.26) | ||
| A/A | 14 (2.3%) | 26 (4.3%) | 1.91 (0.98–3.72) | ||
| rs879255689 | G/G | 421 (70.2%) | 381 (63.5%) | 1 | 0.013* |
| G/A | 167 (27.8%) | 194 (32.3%) | 1.28 (1.01–1.65) | ||
| A/A | 12 (2%) | 25 (4.2%) | 2.30 (1.14–4.65) |
Note: *p < 0.05 indicates statistical significance.
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Figure 1The genotype distributions of candidate SNPs between lung cancer cases and healthy controls.
Association Between SNPs and Risk of Lung Cancer in Genetic Models
| SNP | Model | Genotype | Control | Case | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs13098637 | Dominant | T/T | 430 (71.7%) | 387 (64.5%) | 1 | 0.007* |
| T/C-C/C | 170 (28.3%) | 213 (35.5%) | 1.40 (1.09–1.78) | |||
| Recessive | T/T-T/C | 587 (97.8%) | 576 (96%) | 1 | 0.068 | |
| C/C | 13 (2.2%) | 24 (4%) | 1.87 (0.94–3.70) | |||
| Log-additive | — | — | — | 1.37 (1.11–1.70) | 0.004* | |
| rs3976523 | Dominant | A/A | 269 (44.8%) | 243 (40.5%) | 1 | 0.130 |
| A/C-C/C | 331 (55.2%) | 357 (59.5%) | 1.19 (0.95–1.50) | |||
| Recessive | A/A-A/C | 537 (89.5%) | 528 (88%) | 1 | 0.410 | |
| C/C | 63 (10.5%) | 72 (12%) | 1.16 (0.81–1.67) | |||
| Log-additive | — | — | — | 1.14 (0.96–1.35) | 0.130 | |
| rs4240897 | Dominant | G/G | 257 (42.8%) | 321 (53.5%) | 1 | <0.001* |
| G/A-A/A | 343 (57.2%) | 279 (46.5%) | 0.65 (0.52–0.82) | |||
| Recessive | G/G-G/A | 530 (88.3%) | 563 (93.8%) | 1 | <0.001* | |
| A/A | 70 (11.7%) | 37 (6.2%) | 0.49 (0.32–0.75) | |||
| Log-additive | — | — | — | 0.67 (0.56–0.80) | <0.001* | |
| rs2236058 | Dominant | C/C | 138 (23%) | 179 (29.8%) | 1 | 0.008* |
| C/G-G/G | 462 (77%) | 421 (70.2%) | 0.71 (0.54–0.91) | |||
| Recessive | C/C-C/G | 427 (71.2%) | 485 (80.8%) | 1 | <0.001* | |
| G/G | 173 (28.8%) | 115 (19.2%) | 0.59 (0.45–0.77) | |||
| Log-additive | — | — | — | 0.72 (0.61–0.85) | <0.001* | |
| rs879255685 | Dominant | G/G | 393 (65.5%) | 386 (64.3%) | 1 | 0.680 |
| G/A-A/A | 207 (34.5%) | 214 (35.7%) | 1.05 (0.83–1.33) | |||
| Recessive | G/G-G/A | 586 (97.7%) | 574 (95.7%) | 1 | 0.048* | |
| A/A | 14 (2.3%) | 26 (4.3%) | 1.92 (0.99–3.72) | |||
| Log-additive | — | — | — | 1.11 (0.90–1.36) | 0.320 | |
| rs879255689 | Dominant | G/G | 421 (70.2%) | 381 (63.5%) | 1 | 0.014* |
| G/A-A/A | 179 (29.8%) | 219 (36.5%) | 1.35 (1.06–1.72) | |||
| Recessive | G/G-G/A | 588 (98%) | 575 (95.8%) | 1 | 0.028* | |
| A/A | 12 (2%) | 25 (4.2%) | 2.14 (1.06–4.30) | |||
| Log-additive | — | — | — | 1.36 (1.10–1.68) | 0.005* |
Note: *p < 0.05 indicates statistical significance.
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Association Between SNPs and Risk of Lung Cancer in Smokers and Nonsmokers
| SNP | Model | Genotype | Smokers | Nonsmokers | ||
|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | p | ||||
| rs13098637 | Dominant | T/T | 1 | 0.028* | 1 | 0.130 |
| T/C-C/C | 1.41 (1.04–1.93) | 1.36 (0.91–2.02) | ||||
| Recessive | T/T-T/C | 1 | 0.980 | 1 | 0.004* | |
| C/C | 1.01 (0.42–2.46) | 5.06 (1.42–18.03) | ||||
| Log-additive | — | 1.31 (1.00–1.72) | 0.052 | 1.47 (1.04–2.07) | 0.026* | |
| rs3976523 | Dominant | A/A | 1 | 0.320 | 1 | 0.230 |
| A/C-C/C | 1.16 (0.87–1.54) | 1.26 (0.87–1.84) | ||||
| Recessive | A/A-A/C | 1 | 0.520 | 1 | 0.550 | |
| C/C | 1.17 (0.73–1.87) | 1.19 (0.67–2.10) | ||||
| Log-additive | — | 1.12 (0.90–1.40) | 0.290 | 1.18 (0.89–1.56) | 0.240 | |
| rs4240897 | Dominant | G/G | 1 | 0.014* | 1 | 0.004* |
| G/A-A/A | 0.70 (0.52–0.93) | 0.57 (0.39–0.84) | ||||
| Recessive | G/G-G/A | 1 | 0.039* | 1 | 0.002* | |
| A/A | 0.60 (0.37–0.98) | 0.30 (0.13–0.68) | ||||
| Log-additive | — | 0.73 (0.59–0.91) | 0.005* | 0.57 (0.42–0.78) | <0.001* | |
| rs2236058 | Dominant | C/C | 1 | 0.420 | 1 | 0.180 |
| C/G-G/G | 0.88 (0.64–1.20) | 1.40 (0.99–3.11) | ||||
| Recessive | C/C-C/G | 1 | 0.012* | 1 | 0.230 | |
| G/G | 0.65 (0.46–0.91) | 1.35 (0.46–2.79) | ||||
| Log-additive | – | 0.82 (0.67–0.99) | 0.049* | 1.81 (0.36–2.41) | 0.140 | |
| rs879255685 | Dominant | G/G | 1 | 0.930 | 1 | 0.550 |
| G/A-A/A | 1.01 (0.75–1.36) | 1.13 (0.76–1.68) | ||||
| Recessive | G/G-G/A | 1 | 0.680 | 1 | 0.052 | |
| A/A | 1.19 (0.51–2.80) | 3.78 (1.22–11.71) | ||||
| Log-additive | — | 1.03 (0.79–1.34) | 0.840 | 1.26 (0.90–1.76) | 0.170 | |
| rs879255689 | Dominant | G/G | 1 | 0.110 | 1 | 0.042* |
| G/A-A/A | 1.28 (0.95–1.72) | 1.52 (1.01–2.30) | ||||
| Recessive | G/G-G/A | 1 | 0.100 | 1 | 0.140 | |
| A/A | 2.20 (0.83–5.85) | 2.08 (0.77–5.65) | ||||
| Log-additive | — | 1.30 (0.99–1.70) | 0.056 | 1.46 (1.03–2.06) | 0.030* | |
Note: *p < 0.05 indicates statistical significance.
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Association Between SNPs and Risk of Adenocarcinoma, Squamous Cell Carcinoma and Small Cell Lung Cancer
| SNP | Model | Genotype | Adenocarcinoma | Squamous Cell Carcinoma | Small Cell Lung Cancer | |||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | ||||||
| rs13098637 | Dominant | T/T | 1 | 0.019* | 1 | 0.180 | 1 | 0.009* |
| T/C-C/C | 1.44 (1.06–1.95) | 1.28 (0.90–1.83) | 1.78 (1.16–2.71) | |||||
| Recessive | T/T-T/C | 1 | 0.028* | 1 | 0.760 | 1 | 0.420 | |
| C/C | 2.41 (1.11–5.25) | 1.18 (0.41–3.38) | 1.63 (0.52–5.13) | |||||
| Log-additive | — | 1.44 (1.11–1.87) | 0.006* | 1.23 (0.90–1.69) | 0.2 | 1.62 (1.13–2.33) | 0.011* | |
| rs3976523 | Dominant | A/A | 1 | 0.071 | 1 | 0.066 | 1 | 0.047 |
| A/C-C/C | 1.31 (0.98–1.75) | 1.38 (0.98–1.94) | 0.66 (0.44–1.00) | |||||
| Recessive | A/A-A/C | 1 | 0.670 | 1 | 0.820 | 1 | 0.520 | |
| C/C | 1.10 (0.70–1.73) | 1.06 (0.62–1.82) | 1.23 (0.66–2.29) | |||||
| Log-additive | — | 1.19 (0.96–1.47) | 0.120 | 1.21 (0.94–1.56) | 0.140 | 0.83 (0.60–1.13) | 0.230 | |
| rs4240897 | Dominant | G/G | 1 | 0.011* | 1 | 0.029* | 1 | 0.015* |
| G/A-A/A | 0.69 (0.52–0.92) | 0.69 (0.49–0.96) | 0.60 (0.40–0.91) | |||||
| Recessive | G/G-G/A | 1 | 0.009* | 1 | 0.006* | 1 | 0.053 | |
| A/A | 0.50 (0.28–0.86) | 0.41 (0.20–0.82) | 0.45 (0.19–1.05) | |||||
| Log-additive | — | 0.70 (0.56–0.88) | 0.002* | 0.68 (0.52–0.89) | 0.004* | 0.63 (0.45–0.88) | 0.006* | |
| rs2236058 | Dominant | C/C | 1 | 0.150 | 1 | 0.082 | 1 | 0.086 |
| C/G-G/G | 1.84 (0.89–2.62) | 1.41 (0.95–2.10) | 1.96 (0.76–3.31) | |||||
| Recessive | C/C-C/G | 1 | 0.260 | 1 | 0.220 | 1 | 0.130 | |
| G/G | 1.46 (0.65–2.02) | 1.27 (0.87–1.84) | 1.43 (0.91–2.26) | |||||
| Log-additive | — | 1.44 (0.77–1.77) | 0.054 | 1.24 (0.98–1.56) | 0.072 | 1.45 (0.78–1.94) | 0.052 | |
| rs879255685 | Dominant | G/G | 1 | 0.610 | 1 | 0.860 | 1 | 0.720 |
| G/A-A/A | 1.08 (0.80–1.46) | 1.03 (0.73–1.46) | 1.08 (0.71–1.65) | |||||
| Recessive | G/G-G/A | 1 | 0.470 | 1 | 0.172 | 1 | 0.250 | |
| A/A | 1.38 (0.59–3.25) | 3.13 (0.94–7.01) | 1.91 (0.67–5.44) | |||||
| Log-additive | — | 1.10 (0.84–1.43) | 0.500 | 1.18 (0.88–1.59) | 0.280 | 1.14 (0.79–1.65) | 0.490 | |
| rs879255689 | Dominant | G/G | 1 | 0.230 | 1 | 0.023* | 1 | 0.045* |
| G/A-A/A | 1.21 (0.89–1.65) | 1.50 (1.06–2.12) | 1.55 (1.02–2.36) | |||||
| Recessive | G/G-G/A | 1 | 0.230 | 1 | 0.120 | 1 | 0.018* | |
| A/A | 1.71 (0.72–4.03) | 2.21 (0.84–5.80) | 3.46 (1.32–9.08) | |||||
| Log-additive | — | 1.22 (0.93–1.60) | 0.150 | 1.48 (1.09–2.01) | 0.013* | 1.60 (1.12–2.29) | 0.011* | |
Note: *p < 0.05 indicates statistical significance.
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.