Literature DB >> 34162904

Evaluation of the BD Phoenix CPO detect panel for prediction of Ambler class carbapenemases.

Daniel Jonas1, Sandra Reuter2, Sarah Klassen2, Sabine Weber2, Marion Buck2, Tommaso Giani3,4, Gian Maria Rossolini3,4, Hajo Grundmann2.   

Abstract

Rapid detection of carbapenemases as a cause of resistance is beneficial for infection control and antimicrobial therapy. The BD Phoenix NMIC-502 panel and CPO detect test identifies presence of carbapenemases in Enterobacterales such as Klebsiella pneumoniae and assigns them to Ambler classes. To evaluate the performance of the CPO detect panel, we employed a European collection of 1222 K. pneumoniae including carbapenem non-susceptible and susceptible clinical isolates from 26 countries, for which draft genomes were available after Illumina sequencing and the presence of carbapenemase genes had been identified by ARIBA gene calling. The CPO panel detected 488 out of 494 carbapenemase-encoding isolates as positive and six as negative. One-hundred and two isolates were tested positive for carbapenemase in the absence of any carbapenemase gene. The CPO panel identified 229 out of 230 KPC-positive isolates as carbapenemase producing and classified 62 of these as class A enzyme. Similarly, the CPO panel correctly specified 167 of 182 as class D. Regarding metallo-beta-lactamases, the CPO panel assigned 78 of 90 MBL positive isolates to class B enzymes. The sensitivity of the CPO panel in detecting carbapenemase activity was 99.5%, 97.7% and 98.3% for class A, B and D enzymes, respectively. The sensitivity in assignation to Ambler class A, B and D was 27%, 86% and 91%, respectively. An overall sensitivity of 98.8% and specificity of 86% in unclassified detection of carbapenemases was observed, with frequent false positive detection of carbapenemase producing organisms, thus rendering further confirmatory tests necessary.

Entities:  

Year:  2021        PMID: 34162904     DOI: 10.1038/s41598-021-92336-3

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  35 in total

1.  Klebsiella pneumoniae outer membrane porins OmpK35 and OmpK36 play roles in both antimicrobial resistance and virulence.

Authors:  Yu-Kuo Tsai; Chang-Phone Fung; Jung-Chung Lin; Jiun-Han Chen; Feng-Yee Chang; Te-Li Chen; L Kristopher Siu
Journal:  Antimicrob Agents Chemother       Date:  2011-01-31       Impact factor: 5.191

2.  Modulation of Membrane Influx and Efflux in Escherichia coli Sequence Type 131 Has an Impact on Bacterial Motility, Biofilm Formation, and Virulence in a Caenorhabditis elegans Model.

Authors:  Alix Pantel; Catherine Dunyach-Remy; Christelle Ngba Essebe; Jennifer Mesureur; Albert Sotto; Jean-Marie Pagès; Marie-Hélène Nicolas-Chanoine; Jean-Philippe Lavigne
Journal:  Antimicrob Agents Chemother       Date:  2016-04-22       Impact factor: 5.191

3.  Carbapenem-Resistant Enterobacterales, Carbapenem Resistant Organisms, Carbapenemase-Producing Enterobacterales, and Carbapenemase-Producing Organisms: Terminology Past its "Sell-By Date" in an Era of New Antibiotics and Regional Carbapenemase Epidemiology.

Authors:  David M Livermore; David P Nicolau; Katie L Hopkins; Danièle Meunier
Journal:  Clin Infect Dis       Date:  2020-10-23       Impact factor: 9.079

Review 4.  The global epidemiology of carbapenemase-producing Enterobacteriaceae.

Authors:  David van Duin; Yohei Doi
Journal:  Virulence       Date:  2016-08-11       Impact factor: 5.882

5.  Optimization of novel monobactams with activity against carbapenem-resistant Enterobacteriaceae - Identification of LYS228.

Authors:  Folkert Reck; Alun Bermingham; Johanne Blais; Vladimir Capka; Taryn Cariaga; Anthony Casarez; Richard Colvin; Charles R Dean; Alex Fekete; Wanben Gong; Ellie Growcott; Hongqiu Guo; Adriana K Jones; Cindy Li; Fengxia Li; Xiaodong Lin; Mika Lindvall; Sara Lopez; David McKenney; Louis Metzger; Heinz E Moser; Ramadevi Prathapam; Dita Rasper; Patrick Rudewicz; Vijay Sethuraman; Xiaoyu Shen; Jacob Shaul; Robert L Simmons; Kyuto Tashiro; Dazhi Tang; Meiliana Tjandra; Nancy Turner; Tsuyoshi Uehara; Charles Vitt; Steven Whitebread; Aregahegn Yifru; Xu Zang; Qingming Zhu
Journal:  Bioorg Med Chem Lett       Date:  2018-01-04       Impact factor: 2.823

Review 6.  The Epidemiology of Carbapenem-Resistant Enterobacteriaceae: The Impact and Evolution of a Global Menace.

Authors:  Latania K Logan; Robert A Weinstein
Journal:  J Infect Dis       Date:  2017-02-15       Impact factor: 5.226

7.  An overview of the kinetic parameters of class B beta-lactamases.

Authors:  A Felici; G Amicosante; A Oratore; R Strom; P Ledent; B Joris; L Fanuel; J M Frère
Journal:  Biochem J       Date:  1993-04-01       Impact factor: 3.857

Review 8.  Treating infections caused by carbapenemase-producing Enterobacteriaceae.

Authors:  L S Tzouvelekis; A Markogiannakis; E Piperaki; M Souli; G L Daikos
Journal:  Clin Microbiol Infect       Date:  2014-07-12       Impact factor: 8.067

9.  Rapid detection of carbapenemase-producing Enterobacteriaceae.

Authors:  Patrice Nordmann; Laurent Poirel; Laurent Dortet
Journal:  Emerg Infect Dis       Date:  2012-09       Impact factor: 6.883

10.  How Porin Heterogeneity and Trade-Offs Affect the Antibiotic Susceptibility of Gram-Negative Bacteria.

Authors:  Thomas Ferenci; Katherine Phan
Journal:  Genes (Basel)       Date:  2015-10-21       Impact factor: 4.096

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  1 in total

1.  Evaluation of LAMP assay using phenotypic tests and PCR for detection of blaKPC gene among clinical samples.

Authors:  Nianzhen Chen; Gen Li; Yuying Si; Wenyan Zhang; Yangqin Ye; Yuchao Wang; Keli Wang; Ming Zong; Lieying Fan
Journal:  J Clin Lab Anal       Date:  2022-02-26       Impact factor: 2.352

  1 in total

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