| Literature DB >> 34161908 |
Nan Zhang1, Pak-To Jack Chan2, Wei Jia3, Chung-Hin Dung2, Pengcheng Zhao2, Hao Lei4, Boni Su5, Peng Xue6, Weirong Zhang6, Jingchao Xie6, Yuguo Li7.
Abstract
By the end of February 2021, COVID-19 had spread to over 230 countries, with more than 100 million confirmed cases and 2.5 million deaths. To control infection spread with the least disruption to economic and societal activities, it is crucial to implement the various interventions effectively. In this study, we developed an agent-based SEIR model, using real demographic and geographic data from Hong Kong, to analyse the efficiency of various intervention strategies in preventing infection by the SARS-CoV-2 virus. Close contact route including short-range airborne is considered as the main transmission routes for COVID-19 spread. Contact tracing is not that useful if all other interventions have been fully deployed. The number of infected individuals could be halved if people reduced their close contact rate by 25%. For reducing transmission, students should be prioritized for vaccination rather than retired older people and preschool aged children. Home isolation, and taking the nucleic acid test (NAT) as soon as possible after symptom onset, are much more effective interventions than wearing masks in public places. Temperature screening in public places only disrupted the infection spread by a small amount when other interventions have been fully implemented. Our results may be useful for other highly populated cities, when choosing their intervention strategies to prevent outbreaks of COVID-19 and similar diseases.Entities:
Keywords: COVID-19; Close contact; Mask; SEIR model; Temperature screening; Vaccine
Year: 2021 PMID: 34161908 PMCID: PMC8214805 DOI: 10.1016/j.envint.2021.106723
Source DB: PubMed Journal: Environ Int ISSN: 0160-4120 Impact factor: 9.621
Fig. 1Building and 431 district council constituency area distribution in Hong Kong.
Fig. 2Model introduction. (a) An improved SEIR model; (b) daily commutes in the agent-based model (the ratio of workers/students going to companies/schools, and of to , are time-variant parameters); (c) construction of the agent-based SEIIR model (Y: yes; N: no; NAT: nucleic acid testing; Q: policy for mandatory quarantine for arriving population; : precision of nucleic acid testing for exposed and asymptomatic cases; : probability of fever detection when entering public areas; : precision of fever detection for symptomatic individuals; : the transmission rate during close contact per hour; : mask efficiency for infection risk reduction; : incubation period; : infectious period).
Fixed and time-variant parameters in the simulation.
| Parameter | Default Value | Source |
|---|---|---|
| Simulation period | Jan. 14 to Apr. 30 | First case had the symptom on Jan. 14 (HKCHP, 2020) |
| Efficiency of mask | 50% | Assumed based on |
| Rate of contact tracing | 50% | Assumed |
| Percent of asymptomatic cases | 18% | |
| Incubation period | 5.2 days (log-normal distribution) | |
| Infectious period | 5 days | |
| Total population | 7,500,700 | Hong Kong government ( |
| Total workers | 4,005,916 | |
| Total students | 1,154,246 | |
| Distribution of students | – | Based on census data (Appendix C) |
| Number of residential buildings | 28,063 | Estimated based on census of major housing estates ( |
| Number of homes | 2,675,849 | Estimated based on CSD 2019( |
| The maximum number of family members | 10 | Assumed |
| Number of offices | 400,799 | Assumed based on the total number of workers and average number of workers per office ( |
| Number of companies | 4226 | Assumed based on total number of offices and average number of offices per company ( |
| Number of schools | 2209 | Education Bureau of the Hong Kong Government ( |
| Number of classes | 37,900 | Education Bureau of the Hong Kong Government ( |
| Number of restaurants | 15,979 | Food and Environment Hygiene Department, HKSAR ( |
| Number of markets | 1,884 | Food and Health Bureau of Hong Kong ( |
| Number of major shopping malls | 130 | Based on the list on Wikipedia, and then manually confirmed by our team |
| Number of hospitals (only received COVID-19 patients) | 16 | |
| Capacity for COVID-19 patients of all hospitals | 1000 | Assumed |
| Time to start work/school in the morning | 8:00 | |
| Time for lunch | 12:00 | |
| Time for work/school in the afternoon | 13:00 | |
| Time for dinner | 18:00 | |
| Time for shopping | 19:00 | |
| Time for going home at night | 21:00 | |
| Percent of non-mobile individuals in the population | 15% | Calculated based on the Hong Kong 2016 Population By-census |
| Percent of super-spreaders | 19% | |
| Infectivity of super-spreaders | 17 times greater | |
| Probability of fever | 50% | |
| Mandatory quarantine for arrivals | Gradually quarantine | |
| Percentage of workers/students eating at restaurants | Time-variant | Figure S2(A) |
| Percentage of ‘work at home’ | Time-variant | Figure S2(B) |
| Percentage of school closure | Time-variant | Figure S2(C) |
| Probability of residents going to markets and shopping malls per day | Time-variant | Figure S2(D) and S2(E) |
| Probability of staying at home when having symptoms | Time-variant | Figure S2(F) |
| Mask wearing rate in workplaces, schools, markets, and shopping malls | Time-variant | Figures S2(G) to S2(I) |
| Close contact rate | Time-variant | Figures S2(K) to S2(P) |
Fever is defined as a reported temperature of 38.0 degree or higher.
Close contact rate is the percentage of indoor time spent on close contact. 100% of close contact rate shows a person spent all indoor time on close contact.
Fig. 3Cases reported in Hong Kong between Jan. 14 and Apr. 30.
Fig. 4Simulation results. (a) Spread of local infections with time (officially reported and simulated data show the daily number of newly infected cases; the grey area denotes the 95% confidence interval); (b) daily effective reproduction number .
Fig. 5Efficiency of risk reduction using close contact tracing. (A) percent of traced individuals; (B) the date of implementing close contact tracing at the actual level (with a 10-day interval).
Fig. 6Efficiency of risk reduction due to close contact rate in (A) home; (B) workplace; (C) school; (D) restaurant; (E) market; (F) shopping mall; (G) all indoor environments. (100% reduction in close contact rate means that there is no close contact in a specific indoor environment).
Fig. 7Vaccination. (A) different effective vaccination rates combining with strategies which have been implemented; (B) only 35,000 used in each group; (C) different effective vaccination rates under uncontrolled condition.
Fig. 8Other intervention effects on infection control and prevention. (A) Delay in receiving a NAT after symptom onset (days); (B) probability of home isolation after symptomatic onset; (C) rate of mask wearing; (D) fever detection rate in public places; (E) initial R.