Literature DB >> 34160809

In Vivo Silencing/Overexpression of lncRNAs by CRISPR/Cas System.

Marianna Vitiello1,2, Laura Poliseno3,4, Pier Paolo Pandolfi5,6.   

Abstract

Long noncoding RNAs (lncRNAs) are implicated in several biological processes and it has been observed that their expression is altered in several diseases. The generation of animal models where selective silencing or overexpression of lncRNAs can be attained is crucial for their biological characterization, since it offers the opportunity to analyze their function at the tissue specific or organismal level. CRISPR/Cas technology is a newly developed tool that allows to easily manipulate the mouse genome, in turn allowing to discover lncRNAs functions in an in vivo context. Here, we provide an overview of how CRISPR/Cas technology can be used to generate transgenic mouse models in which lncRNAs can be studied.

Entities:  

Keywords:  CRISPR/Cas system; Genetically engineered mouse model; lncRNA

Year:  2021        PMID: 34160809     DOI: 10.1007/978-1-0716-1581-2_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  52 in total

1.  Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.

Authors:  Stefan Washietl; Ivo L Hofacker; Melanie Lukasser; Alexander Hüttenhofer; Peter F Stadler
Journal:  Nat Biotechnol       Date:  2005-11       Impact factor: 54.908

2.  lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1.

Authors:  Debojyoti Chakraborty; Maciej Paszkowski-Rogacz; Nicolas Berger; Li Ding; Jovan Mircetic; Jun Fu; Vytautas Iesmantavicius; Chunaram Choudhary; Konstantinos Anastassiadis; A Francis Stewart; Frank Buchholz
Journal:  Cell Rep       Date:  2017-12-12       Impact factor: 9.423

3.  An atlas of human long non-coding RNAs with accurate 5' ends.

Authors:  Chung-Chau Hon; Jordan A Ramilowski; Jayson Harshbarger; Nicolas Bertin; Owen J L Rackham; Julian Gough; Elena Denisenko; Sebastian Schmeier; Thomas M Poulsen; Jessica Severin; Marina Lizio; Hideya Kawaji; Takeya Kasukawa; Masayoshi Itoh; A Maxwell Burroughs; Shohei Noma; Sarah Djebali; Tanvir Alam; Yulia A Medvedeva; Alison C Testa; Leonard Lipovich; Chi-Wai Yip; Imad Abugessaisa; Mickaël Mendez; Akira Hasegawa; Dave Tang; Timo Lassmann; Peter Heutink; Magda Babina; Christine A Wells; Soichi Kojima; Yukio Nakamura; Harukazu Suzuki; Carsten O Daub; Michiel J L de Hoon; Erik Arner; Yoshihide Hayashizaki; Piero Carninci; Alistair R R Forrest
Journal:  Nature       Date:  2017-03-01       Impact factor: 49.962

Review 4.  Guided by RNAs: X-inactivation as a model for lncRNA function.

Authors:  John E Froberg; Lin Yang; Jeannie T Lee
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

5.  Interaction of plasma-derived lipid transfer protein with macrophages in culture.

Authors:  R E Morton
Journal:  J Lipid Res       Date:  1988-10       Impact factor: 5.922

6.  MicroRNA-145, a novel smooth muscle cell phenotypic marker and modulator, controls vascular neointimal lesion formation.

Authors:  Yunhui Cheng; Xiaojun Liu; Jian Yang; Ying Lin; Da-Zhong Xu; Qi Lu; Edwin A Deitch; Yuqing Huo; Ellise S Delphin; Chunxiang Zhang
Journal:  Circ Res       Date:  2009-06-18       Impact factor: 17.367

7.  Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species.

Authors:  Hadas Hezroni; David Koppstein; Matthew G Schwartz; Alexandra Avrutin; David P Bartel; Igor Ulitsky
Journal:  Cell Rep       Date:  2015-05-07       Impact factor: 9.423

8.  The landscape of long noncoding RNAs in the human transcriptome.

Authors:  Matthew K Iyer; Yashar S Niknafs; Rohit Malik; Udit Singhal; Anirban Sahu; Yasuyuki Hosono; Terrence R Barrette; John R Prensner; Joseph R Evans; Shuang Zhao; Anton Poliakov; Xuhong Cao; Saravana M Dhanasekaran; Yi-Mi Wu; Dan R Robinson; David G Beer; Felix Y Feng; Hariharan K Iyer; Arul M Chinnaiyan
Journal:  Nat Genet       Date:  2015-01-19       Impact factor: 38.330

9.  miR-145 and miR-143 regulate smooth muscle cell fate and plasticity.

Authors:  Kimberly R Cordes; Neil T Sheehy; Mark P White; Emily C Berry; Sarah U Morton; Alecia N Muth; Ting-Hein Lee; Joseph M Miano; Kathryn N Ivey; Deepak Srivastava
Journal:  Nature       Date:  2009-07-05       Impact factor: 49.962

10.  LNCipedia 5: towards a reference set of human long non-coding RNAs.

Authors:  Pieter-Jan Volders; Jasper Anckaert; Kenneth Verheggen; Justine Nuytens; Lennart Martens; Pieter Mestdagh; Jo Vandesompele
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  1 in total

Review 1.  Decoding microRNA drivers in atherosclerosis.

Authors:  Tanwi Vartak; Soundharya Kumaresan; Eoin Brennan
Journal:  Biosci Rep       Date:  2022-07-29       Impact factor: 3.976

  1 in total

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