Literature DB >> 34160802

Quantitation of Long Noncoding RNA Using Digital PCR.

Yu Ota1, Irene K Yan1, Tushar Patel1.   

Abstract

Long noncoding RNAs (lncRNAs) are implicated in many physiological or disease processes and alterations in their expression may contribute to the development of various diseases. Accurate quantitation of lncRNA can be useful in measuring changes in expression in different settings such as in the circulation where the measurement of lncRNA may be useful as a biomarker of disease. However, the low levels of lncRNA expression require the use of highly sensitive detection technologies for accurate quantitation. Digital polymerase chain reaction (dPCR) is a sensitive method for absolute quantification of lncRNA and can be useful for measurement of gene expression when transcript levels are low. By providing a direct measurement without normalization, the use of dPCR may provide advantages for quantitation of low-abundance targets.

Keywords:  Digital PCR; Gene expression; Long noncoding RNA

Year:  2021        PMID: 34160802     DOI: 10.1007/978-1-0716-1581-2_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Absolute quantification of lung cancer related microRNA by droplet digital PCR.

Authors:  Ping Wang; Fengxiang Jing; Gang Li; Zhenhua Wu; Zule Cheng; Jishen Zhang; Honglian Zhang; Chunping Jia; Qinghui Jin; Hongju Mao; Jianlong Zhao
Journal:  Biosens Bioelectron       Date:  2015-07-22       Impact factor: 10.618

2.  Digital quantitation of potential therapeutic target RNAs.

Authors:  David W Dodd; Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2013-05-08       Impact factor: 5.486

3.  Droplet digital PCR improves urinary exosomal miRNA detection compared to real-time PCR.

Authors:  Cong Wang; Qiang Ding; Pamela Plant; Mayada Basheer; Chuance Yang; Eriny Tawedrous; Adriana Krizova; Carl Boulos; Mina Farag; Yufeng Cheng; George M Yousef
Journal:  Clin Biochem       Date:  2019-03-21       Impact factor: 3.281

4.  Droplet Digital PCR for Quantitation of Extracellular RNA.

Authors:  Irene K Yan; Rishabh Lohray; Tushar Patel
Journal:  Methods Mol Biol       Date:  2018

5.  Detection of circulating tumor DNA (ctDNA) by digital droplet polymerase chain reaction (dd-PCR) in liquid biopsies.

Authors:  Sara Valpione; Luca Campana
Journal:  Methods Enzymol       Date:  2019-08-14       Impact factor: 1.600

Review 6.  Functional Classification and Experimental Dissection of Long Noncoding RNAs.

Authors:  Florian Kopp; Joshua T Mendell
Journal:  Cell       Date:  2018-01-25       Impact factor: 41.582

7.  Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification.

Authors:  Leonardo B Pinheiro; Victoria A Coleman; Christopher M Hindson; Jan Herrmann; Benjamin J Hindson; Somanath Bhat; Kerry R Emslie
Journal:  Anal Chem       Date:  2011-12-21       Impact factor: 6.986

8.  Analysis of extracellular RNA by digital PCR.

Authors:  Kenji Takahashi; Irene K Yan; Chaeyoung Kim; Jungsu Kim; Tushar Patel
Journal:  Front Oncol       Date:  2014-06-04       Impact factor: 6.244

9.  Absolute quantification by droplet digital PCR versus analog real-time PCR.

Authors:  Christopher M Hindson; John R Chevillet; Hilary A Briggs; Emily N Gallichotte; Ingrid K Ruf; Benjamin J Hindson; Robert L Vessella; Muneesh Tewari
Journal:  Nat Methods       Date:  2013-09-01       Impact factor: 28.547

Review 10.  Extracellular vesicle long noncoding RNA as potential biomarkers of liver cancer.

Authors:  Swathi Mohankumar; Tushar Patel
Journal:  Brief Funct Genomics       Date:  2015-12-03       Impact factor: 4.241

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