Literature DB >> 34160797

LncRNA as Cancer Biomarkers.

Ingram Iaccarino1, Wolfram Klapper2.   

Abstract

Although the great majority of cancers share a defined group of hallmarks that is responsible for the uncontrolled growth of particular cell types, it is today clear that under the name of cancer we refer to hundreds of different diseases. Furthermore, each of these diseases has an intrinsic variability due to the genetic background in which it develops. The ability to correctly identify these diseases is urgently needed, because each of them may require a specific therapeutic treatment for successful cure. Cancer biomarkers can be extremely valuable tools for efficient diagnosis and prognosis of cancers. In order to succeed in distinguishing between cancer types and progression-associated genetic backgrounds, cancer biomarkers need to have a strong specificity for a particular disease condition. With the development of novel sequencing technologies, it became clear that the set of genes transcribed from human cells is not limited to genes that code for proteins. On the contrary, our cells contain thousands of RNA without any protein-coding potential. The observation that these transcripts have a much higher cell/tissue specificity of expression in comparison to protein-coding genes makes them a potentially very valuable source of novel cancer biomarkers.

Entities:  

Keywords:  Biomarker discovery; Cancer biomarker; Diagnostic; Predictive; Prognostic; lncRNAs

Year:  2021        PMID: 34160797     DOI: 10.1007/978-1-0716-1581-2_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  25 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

Review 2.  Cancer biomarkers.

Authors:  N Lynn Henry; Daniel F Hayes
Journal:  Mol Oncol       Date:  2012-02-06       Impact factor: 6.603

3.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

4.  SOX11 expression is highly specific for mantle cell lymphoma and identifies the cyclin D1-negative subtype.

Authors:  Ana Mozos; Cristina Royo; Elena Hartmann; Daphne De Jong; Cristina Baró; Alexandra Valera; Kai Fu; Dennis D Weisenburger; Jan Delabie; Shih-Sung Chuang; Elaine S Jaffe; Carmen Ruiz-Marcellan; Sandeep Dave; Lisa Rimsza; Rita Braziel; Randy D Gascoyne; Francisco Solé; Armando López-Guillermo; Dolors Colomer; Louis M Staudt; Andreas Rosenwald; German Ott; Pedro Jares; Elias Campo
Journal:  Haematologica       Date:  2009-11       Impact factor: 9.941

5.  MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells.

Authors:  Gero Doose; Andrea Haake; Stephan H Bernhart; Cristina López; Sujitha Duggimpudi; Franziska Wojciech; Anke K Bergmann; Arndt Borkhardt; Birgit Burkhardt; Alexander Claviez; Lora Dimitrova; Siegfried Haas; Jessica I Hoell; Michael Hummel; Dennis Karsch; Wolfram Klapper; Karsten Kleo; Helene Kretzmer; Markus Kreuz; Ralf Küppers; Chris Lawerenz; Dido Lenze; Markus Loeffler; Luisa Mantovani-Löffler; Peter Möller; German Ott; Julia Richter; Marius Rohde; Philip Rosenstiel; Andreas Rosenwald; Markus Schilhabel; Markus Schneider; Ingrid Scholz; Stephan Stilgenbauer; Hendrik G Stunnenberg; Monika Szczepanowski; Lorenz Trümper; Marc A Weniger; Steve Hoffmann; Reiner Siebert; Ingram Iaccarino
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

Review 6.  Functional Classification and Experimental Dissection of Long Noncoding RNAs.

Authors:  Florian Kopp; Joshua T Mendell
Journal:  Cell       Date:  2018-01-25       Impact factor: 41.582

7.  Nuclear expression of the non B-cell lineage Sox11 transcription factor identifies mantle cell lymphoma.

Authors:  Sara Ek; Michael Dictor; Mats Jerkeman; Karin Jirström; Carl A K Borrebaeck
Journal:  Blood       Date:  2007-10-12       Impact factor: 22.113

8.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

9.  Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.

Authors:  John R Prensner; Matthew K Iyer; O Alejandro Balbin; Saravana M Dhanasekaran; Qi Cao; J Chad Brenner; Bharathi Laxman; Irfan A Asangani; Catherine S Grasso; Hal D Kominsky; Xuhong Cao; Xiaojun Jing; Xiaoju Wang; Javed Siddiqui; John T Wei; Daniel Robinson; Hari K Iyer; Nallasivam Palanisamy; Christopher A Maher; Arul M Chinnaiyan
Journal:  Nat Biotechnol       Date:  2011-07-31       Impact factor: 54.908

10.  Landscape of transcription in human cells.

Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  6 in total

Review 1.  Transcriptome analysis provides critical answers to the "variants of uncertain significance" conundrum.

Authors:  Mackenzie D Postel; Julie O Culver; Charité Ricker; David W Craig
Journal:  Hum Mutat       Date:  2022-05-18       Impact factor: 4.700

2.  LINC00892 Is an lncRNA Induced by T Cell Activation and Expressed by Follicular Lymphoma-Resident T Helper Cells.

Authors:  Ingram Iaccarino; Fatme Mourtada; Sarah Reinke; Paurnima Patil; Gero Doose; Gianni Monaco; Steve Hoffmann; Reiner Siebert; Wolfram Klapper
Journal:  Noncoding RNA       Date:  2022-06-01

3.  Enzalutamide-resistant related lncRNA NONHSAT210528 promotes the proliferation and invasion of prostate cancer.

Authors:  Chen Ye; Yuan-Gui Chen; Sheng-Fei Qin; Shou-Yan Tang; Song Li; Min-Feng Shi; Tie Zhou
Journal:  Transl Androl Urol       Date:  2022-05

4.  Comprehensive transcriptome profiling of BET inhibitor-treated HepG2 cells.

Authors:  Mina Baek; Jin Choul Chai; Hae In Choi; Eunyoung Yoo; Bert Binas; Young Seek Lee; Kyoung Hwa Jung; Young Gyu Chai
Journal:  PLoS One       Date:  2022-04-29       Impact factor: 3.240

5.  The Expression of the Long Noncoding RNA AFAP1-AS1 in Laryngeal Carcinoma Affects the Proliferation, Invasion, Migration, and Apoptosis of TU212 Cell Line.

Authors:  Xin Chen; Ziwei Hu; Liao Bing; Xinhua Zhu; Ke Liu; Yuehui Liu; Jianguo Liu
Journal:  Biomed Res Int       Date:  2022-08-04       Impact factor: 3.246

6.  Long non-coding RNA LOC107985656 represses the proliferation of hepatocellular carcinoma cells through activation of the tumor-suppressive Hippo pathway.

Authors:  Yu Zeng; Qin Xu; Nan Xu
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

  6 in total

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