| Literature DB >> 34158085 |
V Deklerck1,2, E Price3,4, S Vanden Abeele5, K Lievens6, E Espinoza4, H Beeckman6.
Abstract
BACKGROUND: To enforce timber import laws and perform timber species identification, the identity of the botanical species must be well-defined. Since the Sapotaceae family is known as a taxonomically challenging family, we focus in this study on the four most valuable Sapotaceae timber species from tropical Africa: Autranella congolensis (De Wild.) A.Chev., Baillonella toxisperma Pierre, Tieghemella africana Pierre and Tieghemella heckelii (A.Chev.) Pierre ex Dubard. The wood anatomical characteristic fiber lumen fraction and Direct Analysis in Real Time-Time of Flight Mass Spectrometry (DART-TOFMS) were used to differentiate the four species and to make inferences on species delineation and taxonomic identity.Entities:
Keywords: DART-TOFMS; Sapotaceae; Taxonomic identity; Timber identification; Wood anatomy
Year: 2021 PMID: 34158085 PMCID: PMC8220841 DOI: 10.1186/s13007-021-00766-x
Source DB: PubMed Journal: Plant Methods ISSN: 1746-4811 Impact factor: 4.993
The number of fiber lumen fraction measurements per species, their mean and standard deviation and the samples used from the Tervuren Wood Collection (Tw)
| Species | n | Average (%) | Std (%) | Samples used from Tw collection |
|---|---|---|---|---|
| 210 | 38.67 | 9.04 | 633, 923, 1175, 1578 | |
| 251 | 44.49 | 6.56 | 10,754, 27,547, 30,909, 44,837, 50,839 | |
| 218 | 64.23 | 9.60 | 10,761, 18,800, 22,610, 26,512 | |
| 281 | 70.34 | 9.08 | 18,005, 21,571, 26,510, 31,670 |
Fig. 1Example of the fiber lumen fraction measurements. The fiber lumen fraction of the fiber is taken as the average of two measurements in perpendicular directions. Sample: Tw18005, Tieghemella heckelii
Fig. 4Principal Component Analysis of mass spectra from the four Sapotaceae species. All species exhibited separate clustering trends except for the Tieghemella spp.
Fig. 2Notched boxplots of the fiber lumen fraction for each of the species. The independent 2-group Mann–Whitney U test and Kolmogorov–Smirnov showed significant differences between all species
Fig. 3Heatmap showing the chemical fingerprint of the samples; each row indicates a single spectrum. The x-axis shows the m/z-value while the y-axis shows sample number; relative abundance of the ion is portrayed through intensity of color, where darker shades indicate a higher relative abundance within the sample. Vouchered specimens are indicated by arrows
Fig. 5Scatterplot of the DAPC model showing the variation between A. congolensis, B. toxisperma and Tieghemella spp. (LOOCV = 96.61%)
Assignment of blind test spectra used to validate the DAPC model
| Test samples | Sample ID | Class probability (%) | Assigned class |
|---|---|---|---|
| Tw1765 | 75.19 | ||
| Tw5190 | 91.73 | ||
| WFID-CBG0030 | 99.97 | ||
| WFID-YRNG838 | 100 | ||
| WFID-GRGY281 | 100 | ||
| Tw22610 | 99.88 | ||
| Tw26511 | 99.95 | ||
| Tw64631 | 98.25 |
Fig. 6Comparison spectrum of T. heckelii and T. africana shows the similarities between the two species’ spectra