| Literature DB >> 34152535 |
Lei Duan1, Xiaohan Yang1,2, Jia Xie1, Wenli Zhan1,2, Changbin Zhang1,2, Hong Liu3, Mengru Wei1,2, Yuan Tang1, Hongyu Zhao1,2, Mingyong Luo4,5.
Abstract
Norovirus, the leading cause of non-bacterial acute gastroenteritis (AGE) worldwide, is constantly mutating. Continuous monitoring of the evolution of epidemic genotypes and emergence of novel genotypes is, therefore, necessary. This study determined the prevalence and clinical characteristics of norovirus strains in AGE in Guangzhou, China in 2019/2020 season. This study included children aged 2-60 months diagnosed with AGE in Guangzhou Women and Children Hospital, from August 2019 to January 2020. Norovirus was detected by real-time polymerase chain reaction and clinical data were obtained. Genotyping and phylogenetic analyses were performed with partial gene sequence fragments located within the open reading frames 1 and 2. During the study period, 168 children (61.3% males) were confirmed as norovirus infectious AGE. The main symptoms were diarrhoea and vomiting and 38 patients (22.6%) had seizures. Norovirus was mainly prevalent in October and November, and GII.4 Sydney[P31] was the major genotype circulating in Guangzhou. The phylogenetic tree showed that the Guangzhou strains had high homology with the strains circulating in 2017-2019 worldwide. GII.4 Sydney was the main prevalent norovirus genotype in Guangzhou from August 2019 to January 2020, which had more severe diarrhoea than those of other genotypes. These findings provide a valuable reference for the prevention, control, and treatment of norovirus in the future.Entities:
Keywords: Acute gastroenteritis; Epidemiological characteristics; GII.4 Sydney; Norovirus; Winter
Mesh:
Substances:
Year: 2021 PMID: 34152535 PMCID: PMC8215640 DOI: 10.1007/s12560-021-09482-0
Source DB: PubMed Journal: Food Environ Virol ISSN: 1867-0334 Impact factor: 2.778
Fig. 1Distribution of norovirus genotypes associated with AGE in Guangzhou in 2019/2020 season. a Total distribution of norovirus genotypes in Guangzhou in 2019/2020 season. b Monthly distribution of the children with norovirus infectious AGE in Guangzhou in 2019/2020 season. The “Others” group included three genotypes: GII.2[P16], GII.6[P7] and GII.13[P21]
Demographic characteristics and clinical manifestations of norovirus-infected patients
| Total | GII.4 | Othersa | Untyped | ||
|---|---|---|---|---|---|
| GII.4 Sydney[P31] | GII. 4 Sydney[P16] | ||||
| Number of patients | 168 (100.0%) | 131 (78.0%) | 20 (11.9%) | 8 (4.8%) | 9 (5.4%) |
| Sex(male) | 103 (61.3%) | 80 (61.1%) | 12 (60.0%) | 6 (75.0%) | 5 (55.6%) |
| Age (month) | 19.0 (13.0–28.8) | 19.0 (13.0–28.0) | 19.5 (14.3–38.5) | 23.0 (21.3–36.8) | 16.0 (11.5–29.0) |
| Number of hospitalisation | 80 (47.6%) | 63 (48.1%) | 8 (40.0%) | 3 (37.5%) | 6 (66.7%) |
| Length of hospital stay(day) | 5.0 (3.0–7.5) | 5.0 (3.0–6.0) | 4.5 (3.0–9.0) | 8.0 (3.0–10.0) | 9.5 (3.0–12.0) |
| Fever | 56 (33.3%) | 41 (31.3%) | 9 (45.0%) | 4 (50.0%) | 2 (22.2%) |
| Body temperature (℃) | 37 (37–37.9) | 37 (37–37.8) | 37 (37–38) | 37.5 (37–39.73) | 37 (36.6–37.4) |
| Vomiting | 141 (83.9%) | 111 (84.7%) | 17 (85.0%) | 7 (87.5%) | 6 (66.7%) |
| Vomiting duration(day) | 2.0 (1.0–3.0) | 2.0 (1.0–3.0) | 1.5 (1.0–3.0) | 1 (1.0–1.8) | 1 (0.0–3.5) |
| Max. no. vomiting episodes/24 h | 3.0 (2.0–6.0) | 3.0 (2.0–6.0) | 4.0 (3.0–9.5) | 4.0 (1.5–4.8) | 3.0 (0.0–6.0) |
| Diarrhoea | 132 (79.0%) | 104 (80.0%) | 15 (75.0%) | 4 (50.0%) | 9 (100.0%) |
| Diarrhoea duration (day) | 2.0 (1.0–5.0) | 2.0 (1.0–5.0) | 2.0 (0.3–6.0) | 0.5 (0.0–1.0)b | 2.0 (1.0–3.0) |
| Max. no. diarrhoea stools/24 h | 3.0 (1.0–6.0) | 3.0 (1.0–5.0) | 5.0 (0.3–8.8) | 1.0 (0.0–2.8)c | 4.0 (3.0–4.5) |
| Anorexia | 82 (48.8%) | 70 (53.4%) | 8 (40.0%) | 2 (25.0%) | 2 (22.2%) |
| Dehydration | 15 (8.9%) | 13 (9.9%) | 1 (5.0%) | 1 (12.5%) | 0 (0.0%) |
| Abdominal pain | 22 (13.1%) | 15 (11.5%) | 4 (20.0%) | 2 (25.0%) | 1 (11.1%) |
| Bloating | 11 (6.5%) | 10 (7.6%) | 1 (5.0%) | 0 (0.0%) | 0 (0.0%) |
| Nausea | 21 (12.5%) | 15 (11.5%) | 3 (15.0%) | 1 (12.5%) | 2 (22.2%) |
| Seizures | 38 (22.6%) | 30 (22.9%) | 5 (25.0%) | 1 (12.5%) | 2 (22.2%) |
| Modified Vesikari scale (MVS) | 10.0 (8.0–13.0) | 10.0 (8.0–13.0) | 10.0 (8.0–14.5) | 8.0 (6.3–10.0)d | 9.0 (7.0–13.0) |
aThe “Others” group contained three genotypes: GII.2[P16], GII.6[P7] and GII.13[P21]
bp = 0.004 < 0.05: GII.4 (2.0; IQR: 1.0–5.0) vs. Others
cp = 0.011 < 0.05: GII.4 (4.0; IQR: 1.0–6.0) vs. Others
dp = 0.044 < 0.05: GII.4 (10.0; IQR: 8.0–13.0) vs. Others
Laboratory examinations of patients associated with the different norovirus genotypes
| Total | GII.4 | Othersa | Untype | ||
|---|---|---|---|---|---|
| GII.4 Sydney[P31] | GII. 4 Sydney [P16] | ||||
| Total number of patients | 168 (100.0%) | 131 (78.0%) | 20 (11.9%) | 8 (4.8%) | 9 (5.4%) |
| hs-CRP (0–10 mg/L) | 1.3 (0.4–5.0) | 1.2 (0.3–5.1) | 2.7 (0.4–5.4) | 1.1 (0.5–6.2) | 1.2 (0.5–9.5) |
| WBC (3.5–9.5 × 109/L) | 9.6 (7.0–12.8) | 9.67 (6.9–13.4) | 10.2 (7.5–12.1) | 12.38 (8.1–20.1) | 7.4 (6.8–9.3) |
| NEUT (1.8–6.3 × 109/L) | 5.1 (2.64–9.21) | 4.9 (2.6–9.3) | 5.4 (2.8–8.1) | 9.7 (4.0–17.9) | 4.0 (1.2–6.7) |
| LYMPH (1.1–3.2 × 109/L) | 3.0 (1.9–4.5) | 2.9 (1.9–4.6) | 3.9 (2.9–4.3) | 2.5 (0.9–5.6) | 2.1 (1.4–4.2) |
| RBC (4.0–4.5 × 109/L) | 4.7 (4.5–4.9) | 4.7 (4.5–4.9) | 4.6 (4.4–4.9) | 5.1 (4.8–5.2) | 4.65 (4.6–4.9) |
| PLT (125–350 × 109/L) | 325 (272.5–392.5) | 332 (273.5–400.0) | 314 (268–438.3) | 314 (202.0–367.0) | 329.0 (234.0–368.0) |
| Na+ (137–147 mmol/L) | 135.9 (134.4–137.6) | 136.0 (134.3–137.6) | 134.7 (132.6–135.6) | 139.2 (137.1–140.7)b | 135.55 (133.7–137.3) |
| Cl− (99–110 mmol/L) | 102.25 (100.3–105.0) | 103 (99.7–105.3) | 102.3 (99.9–105.1) | 105.5 (104.9–107.1)c | 101.7 (97.4–106.2) |
| LDH (180–430 U/L) | 410.4 (310.7–472.2) | 413.6 (329.4–488.7) | 412 (337.9–467.0) | 340.2 (291.1–427.9) | 294.5 (234.9–411.4) |
| AST (15–40 U/L) | 41.0 (34.0–48.0) | 41.0 (34.3–48.0) | 39.0 (31.5–51.0) | 35 (25.3–60.5) | 40.5 (30.3–59.0) |
| HBDH (72–182 U/L) | 226.0 (197.0–249.5) | 229.0 (208.5–259.0) | 216.0 (184.3–241.0) | 222.5 (166.0–262.5) | 200.0 (182.8–233.0) |
| CK-MB (0–25 U/L) | 39.0 (29.0–47.0) | 40.0 (30.5–47.0) | 35.0 (22.0–63.5) | 27.5 (20.0–86.5) | 44.5 (40.3–45.8) |
| FOBT | 24 (14.3%) | 20 (15.3%) | 2 (10.0%) | 2 (25.0%) | 0 (0.0%) |
hs-CRP high-sensitivity C-reactive protein, WBC white blood cell, NEUT neutrophils, LYMPH lymphocytes, RBC red blood cell, PLT platelets, Na sodium, Cl chloride, LDH lactate dehydrogenase, AST aspartate aminotransferase HBDH hydroxybutyrate dehydrogenase, CK-MB creatine kinase isoenzyme, FOBT foecal occult blood test
aThe “Others” group contained three genotypes: GII.2[P16], GII.6[P7] and GII.13[P21]
bp = 0.003 < 0.05: GII.4 (135.8; IQR: 134.2–137.4) vs. Others
cp = 0.007 < 0.05: GII.4 (102.3; IQR: 99.9–105.1) vs. Others
Fig. 2Phylogenetic analysis of the 445 bp norovirus nucleotide sequence within the partial RdRp and VP1 genes. The norovirus strains detected in this study (MT856488-MT856646) and reference sequence retrieved from GenBank were constructed using the neighbour-joining method with bootstrap analysis of 1000 replicates using MEGA X. The nucleotide sequence is presented as GenBank accession number/country/year of isolation/genotype, and the sequences obtained in this study are indicated as bold italics
Fig. 3Phylogenetic analysis based on a the partial RdRp genes(228 bp) and b the partial VP1 genes (237 bp). The norovirus strains detected in this study (MT856488–MT856646) and reference sequence retrieved from GenBank were constructed using the neighbour-joining method with bootstrap analysis of 1000 replicates using MEGA X. The nucleotide sequence is presented as GenBank accession number/country/year of isolation/genotype, and the sequences obtained in this study are indicated as bold italics