| Literature DB >> 34151245 |
Esra Karatas1, Anne-Aurélie Raymond1,2, Céline Leon1, Jean-William Dupuy3, Sylvaine Di-Tommaso2, Nathalie Senant4, Sophie Collardeau-Frachon5,6,7, Mathias Ruiz6,8,7, Alain Lachaux6,8,7, Frédéric Saltel1,2, Marion Bouchecareilh1.
Abstract
BACKGROUND & AIMS: A single point mutation in the Z-variant of alpha 1-antitrypsin (Z-AAT) alone can lead to both a protein folding and trafficking defect, preventing its exit from the endoplasmic reticulum (ER), and the formation of aggregates that are retained as inclusions within the ER of hepatocytes. These defects result in a systemic AAT deficiency (AATD) that causes lung disease, whereas the ER-retained aggregates can induce severe liver injury in patients with ZZ-AATD. Unfortunately, therapeutic approaches are still limited and liver transplantation represents the only curative treatment option. To overcome this limitation, a better understanding of the molecular basis of ER aggregate formation could provide new strategies for therapeutic intervention.Entities:
Keywords: AAT, alpha 1-antitrypsin; AATD, alpha 1-antitrypsin deficiency; Alpha 1-antitrypsin deficiency; CF, cystic fibrosis; CFTR, cystic fibrosis transmembrane conductance regulator; Cysteamine; ER, endoplasmic reticulum; FFPE, formalin-fixed paraffin-embedded; FKBP10, FK506-binding protein (FKBP) isoform 10; HCC, hepatocellular carcinoma; IHC, immunohistochemistry; IP, immunoprecipitation; Liver damage; NHK, null Hong Kong variant of AAT; P4HB, prolyl 4-hydroxylase subunit beta/PDIA1; PDI, protein disulfide isomerase; PDIA3, protein disulfide isomerase family A member 3/ERP57; PDIA4; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; PDIi, PDI inhibitors; Protein disulfide isomerase; ROS, reactive oxygen species; SURF4, proteins Surfeit 4; Scr, scramble; TRX, thioredoxin; TXNDC5, thioredoxin domain containing 5/PDIA15; Treatment; WT, wild-type; Z-AAT, alpha 1-antitrypsin Z variant; ZZ, homozygosis for the Z mutant allele; siRNA, small RNA interference; ΔF508-CFTR, most common mutation of CFTR, which deletes phenylalanine508
Year: 2021 PMID: 34151245 PMCID: PMC8192868 DOI: 10.1016/j.jhepr.2021.100297
Source DB: PubMed Journal: JHEP Rep ISSN: 2589-5559
Fig. 1PDIA4 expression in AATD liver disease.
(A) Proportional Venn diagram depicting the overlap of proteins identified in ZZ hepatocytes from adults and children. This Venn diagram indicates the number of proteins significantly upregulated in ZZ paediatric patients (left – 33 upregulated only in hepatocytes of paediatric ZZ patients) and proteins significantly upregulated in ZZ adult patients (right – 65 upregulated only in hepatocytes of ZZ adult patients) and those 3 proteins detected as commonly upregulated in ZZ patients. (B) Expression level of PDIA4, PDIA3, P4HB, and TXNDC5 in hepatocytes from ZZ children (n = 4/left) and ZZ adult (n = 4/right) patients based on data from hepatocyte proteome analysis. In the box plot, the boxes indicate the median and interquartile range of data, and the error bars represent the minimum and maximum values. ∗p <0.05 as determined by 2-tailed t test using ZZ/WT children ratio as reference. P4HB, prolyl 4-hydroxylase subunit beta/PDIA1; PDIA3, protein disulfide isomerase family A member 3/ERP57; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; TXNDC5: thioredoxin domain containing 5/PDIA15; WT, wild-type; ZZ, homozygosis for the Z mutant allele.
Fig. 2Correction of Z-AAT biogenesis in response to PDIA4 silencing.
(A) Immunoblot analysis of Z-AAT and Hsp90 proteins expression in cell lysates (I, immature; Mat, mature) and culture media (S, secreted) following siRNA-mediated silencing of PDI members in Z-IB3 cells. Traffic of the AAT glycoprotein through the secretory pathway can be monitored by a change in its migration on SDS-PAGE in response to the processing of ER-acquired N-linked oligosaccharides (the immature form: I) during trafficking through the Golgi to generate the slower migrating, mature glycoform (Mat). The latter is secreted in the serum (secreted form: S) by the cell. Quantitative analysis of the level of immature, mature, and secreted Z-AAT forms in response to silencing of the indicated PDI in Z-IB3 cells. Data denote the fold change in Z-AAT expression relative to scramble (scr) control (mean ± SD, n = 3). ∗p <0.05, ∗∗p <0.01, ∗∗∗p <0.001 as determined by 2-tailed t test using scr control as the reference. (B) Immunoblot analysis of Z-AAT, PDIA4, and Hsp90 proteins expression in soluble and insoluble (pellet) fractions following siRNA-mediated silencing of PDIA4 (siPDIA4) in Z-IB3 cells and quantification of Z-AAT insoluble forms following siRNA-mediated silencing of PDIA4 (siPDIA4) to scr control. Data denote the fold change in the protein abundance of the indicated Z-AAT aggregated/insoluble form relative to scr control (mean ± SD, n = 3 independent experiments). ∗p <0.05 as determined by 2-tailed t test using scr as reference. (C) IncuCyte® proliferation assay of Z-IB3 (left) cells following scr control (black) or siRNA-mediated silencing of PDIA4 (siPDIA4/green) treatments. Proliferation was quantified in real time using the IncuCyte® live-cell analysis system (see Materials and methods section). IncuCyte® apoptosis assay (right) was performed on Z-IB3 cells upon scr control (black) or siRNA-mediated silencing of PDIA4 (siPDIA4/green) treatments. IncuCyte® caspase-3/7 green reagent was added into the medium and cells were then incubated all along the indicated time (h). The IncuCyte® caspase-3/7 apoptosis assay green reagent couples the activated caspase-3/7 recognition motif (DEVD) to NucView™ 488, a DNA intercalating dye to enable quantification of apoptosis over time (see Supplementary Materials and methods section). Apoptotic cells were quantified in real time using the IncuCyte® live-cell analysis system. ER, endoplasmic reticulum; PDI, protein disulfide isomerase; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; siRNA, small RNA interference; Z-AAT, alpha 1-antitrypsin Z variant.
Fig. 3PDIA4 expression in AATD liver samples.
(A) PDIA4 staining in liver tissues using a 20× objective from WT paediatric and adult individuals and ZZ paediatric and adult patients as indicated above the pictures. (B) Semi-quantification of PDIA4 expression of PDIA4 IHC images using imageJ software as previously described. Data denote the fold change in the total PDIA4 staining intensity value normalised by the nuclei intensity value. The average of all PDIA4 staining intensities normalised by nuclei number for all IHC images (n = 32) for each sample (n = 8) give an average value and standard deviation value (mean ± SD, n = 4 independent experiments). AATD, alpha 1-antitrypsin deficiency; IHC, immunohistochemistry; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72.
Fig. 4Dynamic changes of the Z-AAT interactome upon PDIA4 silencing.
(A) Proportional Venn diagram depicting the overlap of Z-AAT interactions affected by scramble (scr) control (Z-AAT-blue) or siRNA-mediated silencing of PDIA4 (Z-AAT-siPDIA4/green). This Venn diagram indicates the number of proteins significantly regulated between the Z-AAT interactome upon scr (Z-AAT-blue – 850 interactors) and Z-AAT interactome upon PDIA4 silencing (Z-AAT-siPDIA4/green – 1,051 interactors), core interactome (698 interactors) and those detected only in Z-AAT (152 interactors) or Z-AAT-siPDIA4-IPs (353 interactors). Flag-IPs were performed into Huh7 cell lines that stably express Z-AAT Flag tag and data are representative of at least 3 independent IP experiments per conditions. (B) Immunoblot analysis of AAT (WT and Z), PDIA4, calnexin, and Hsp90 before (input) and after immunoprecipitation of flag tag (IP Flag) into Huh7 cell lines that stably express WT or Z-AAT flag tag. Controls IP (Ctrl IP) correspond to the beads mixed with lysate; from WT or Z-Huh7; without any antibody. Calnexin is used here as a positive control of AAT co-IPs. Data are representative of at least 3 independent IP experiments per conditions. (C) Gene set enrichment: results of the gene ontology (GO) biological processes enrichment for the 353 interactors detected only in Z-AAT-siPDIA4-IPs and significantly differentially expressed between Z-AAT and Z-AAT-siPDIA4-IPs (adjusted p value: p <0.005). The x-axis represents the negative log10 p value. The number of each graph bars corresponds to the fraction of proteins within the set of 70 proteins that have the corresponding GO function. (D) GO biological processes enrichment for the 67 interactors detected only in the corresponding GO_endoplasmic reticulum [1,892] shown in (C). AAT, alpha 1-antitrypsin; IP, immunoprecipitation; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; WT, wild-type; Z-AAT, alpha 1-antitrypsin Z variant.
Fig. 5Effect of cysteamine treatment on Z-AAT secretion and aggregation features.
(A) IncuCyte® proliferation assay of Z-AAT IB3 (left) cells following DMSO/vehicle (black) or with 250 μM of cysteamine (green) treatments. Proliferation was quantified in real time using the IncuCyte® live-cell analysis system (see Materials and methods section). IncuCyte® apoptosis assay (right) was performed on Z-IB3 cells upon DMSO/vehicle (black) or cysteamine (green) treatments. Cells were treated with cysteamine at 250 μM for 18 h and IncuCyte® caspase-3/7 green reagent was added into the medium and cells were then incubated all along the indicated time (h). The IncuCyte® caspase-3/7 apoptosis assay green reagent couples the activated caspase-3/7 recognition motif (DEVD) to NucView™ 488, a DNA intercalating dye to enable quantification of apoptosis over time (see Supplementary Materials and methods section). Apoptotic cells were quantified in real time using the IncuCyte® live-cell analysis system. (B) Immunoblot analysis (above) of AAT expression from culture media following treatment of Z-Huh7 cells with 250 μM of cysteamine for 18 h and quantification (below) of Z-AAT secreted forms following DMSO/vehicle (white graph) or with 250 μM of cysteamine (green graph) treatments. Data denote the fold change in the protein expression of the indicated Z-AAT secreted form relative to DMSO/vehicle treatment (mean ± SD, n = 3 independent experiments). (C) Immunoblot analysis of Z-AAT, PDIA4 and Hsp90 proteins expression in cell lysate soluble and insoluble (pellet) fractions upon DMSO/vehicle or with 250 μM of cysteamine treatments in Z-IB3 cells and quantification of Z-AAT insoluble forms following DMSO/vehicle (white graph) or with 250 μM of cysteamine (green graph) treatments. Data denote the fold change in the protein expression of the indicated Z-AAT aggregated/insoluble form relative to DMSO/vehicle treatment (mean ± SD, n = 3 independent experiments). ∗p <0.05 as determined by 2-tailed t test using DMSO/vehicle as reference. AAT, alpha 1-antitrypsin; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; Z-AAT, alpha 1-antitrypsin Z variant.
Fig. 6Oxidative stress and AATD.
(A) Cysteamine treatment (Cyst) and PDIA4 silencing (si PDIA4) caused a significant decrease in cellular H2O2 levels in Z-AAT (black bars) expressing cells compared with WT-AAT (purple bars) expressing cell lines. Each bar represents mean ± SD of three independent experiments per conditions (∗p <0.05). (B) qPCR analysis of the effect of Z-AAT protein expression, siRNA-mediated silencing of PDIA4 (siA4) and 250 μM cysteamine treatment on the mRNA levels of 10 genes related to oxidative stress in Z-IB3 cells. The data are presented as a fold change in expression relative to WT-IB3 (mean ± SD, n = 3) and genes with a statistically significant difference between WT-AAT and Z-AAT in expression (p <0.05), as determined by Student’s t test, are shown. AAT, alpha 1-antitrypsin; AATD, alpha 1-antitrypsin deficiency; PDIA4, protein disulfide isomerase family A member 4/ERP70/ERP72; siRNA, small RNA interference; WT, wild-type; Z-AAT, alpha 1-antitrypsin Z variant.