Literature DB >> 34148204

Using convolutional neural networks for tick image recognition - a preliminary exploration.

Oghenekaro Omodior1, Mohammad R Saeedpour-Parizi2, Md Khaledur Rahman3, Ariful Azad4, Keith Clay5.   

Abstract

Smartphone cameras and digital devices are increasingly used in the capture of tick images by the public as citizen scientists, and rapid advances in deep learning and computer vision has enabled brand new image recognition models to be trained. However, there is currently no web-based or mobile application that supports automated classification of tick images. The purpose of this study was to compare the accuracy of a deep learning model pre-trained with millions of annotated images in Imagenet, against a shallow custom-build convolutional neural network (CNN) model for the classification of common hard ticks present in anthropic areas from northeastern USA. We created a dataset of approximately 2000 images of four tick species (Ixodes scapularis, Dermacentor variabilis, Amblyomma americanum and Haemaphysalis sp.), two sexes (male, female) and two life stages (adult, nymph). We used these tick images to train two separate CNN models - ResNet-50 and a simple shallow custom-built. We evaluated our models' performance on an independent subset of tick images not seen during training. Compared to the ResNet-50 model, the small shallow custom-built model had higher training (99.7%) and validation (99.1%) accuracies. When tested with new tick image data, the shallow custom-built model yielded higher mean prediction accuracy (80%), greater confidence of true detection (88.7%) and lower mean response time (3.64 s). These results demonstrate that, with limited data size for model training, a simple shallow custom-built CNN model has great prospects for use in the classification of common hard ticks present in anthropic areas from northeastern USA.

Entities:  

Keywords:  Amblyomma americanum; Convolutional neural network; Ixodes scapularis; Northeastern United States; Tick-borne diseases

Year:  2021        PMID: 34148204     DOI: 10.1007/s10493-021-00639-x

Source DB:  PubMed          Journal:  Exp Appl Acarol        ISSN: 0168-8162            Impact factor:   2.132


  1 in total

Review 1.  Tick and Tickborne Pathogen Surveillance as a Public Health Tool in the United States.

Authors:  Rebecca J Eisen; Christopher D Paddock
Journal:  J Med Entomol       Date:  2021-07-16       Impact factor: 2.278

  1 in total
  2 in total

1.  A Computer Vision-Based Approach for Tick Identification Using Deep Learning Models.

Authors:  Chu-Yuan Luo; Patrick Pearson; Guang Xu; Stephen M Rich
Journal:  Insects       Date:  2022-01-22       Impact factor: 2.769

2.  Identification of public submitted tick images: A neural network approach.

Authors:  Lennart Justen; Duncan Carlsmith; Susan M Paskewitz; Lyric C Bartholomay; Gebbiena M Bron
Journal:  PLoS One       Date:  2021-12-02       Impact factor: 3.240

  2 in total

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