Literature DB >> 34145345

Comparative transcriptomic and physiological analyses of weedy rice and cultivated rice to identify vital differentially expressed genes and pathways regulating the ABA response.

Hong Lang1, Yuting He1, Faliang Zeng1, Fan Xu1, Minghui Zhao1, Dianrong Ma2.   

Abstract

Weedy n class="Species">rice is a valuable germplasm resource characterized by its high tolerance to both abiotic and biotic stresses. Abscisic acid (ABA) serves as a regulatory signal in plant cells as part of their adaptive response to stress. However, a global understanding of the response of weedy rice to ABA remains to be elucidated. In the present study, the sensitivity to ABA of weedy rice (WR04-6) was compared with that of temperate japonica Shennong9816 (SN9816) in terms of seed germination and post-germination growth via the application of exogenous ABA and diniconazole, an inhibitor of ABA catabolism. Physiological analysis and a transcriptomic comparison allowed elucidation of the molecular and physiological mechanisms associated with continuous ABA and diniconazole treatment. WR04-6 was found to display higher ABA sensitivity than SN9816, resulting in the rapid promotion of antioxidant enzyme activity. Comparative transcriptomic analyses indicated that the number of differentially expressed genes (DEGs) in WR04-6 seedlings treated with 2 μM ABA or 10 μM diniconazole was greater than that in SN9816 seedlings. Genes involved in stress defense, hormone signal transduction, and glycolytic and citrate cycle pathways were highly expressed in WR04-6 in response to ABA and diniconazole. These findings provide new insight into key processes mediating the ABA response between weedy and cultivated rice.

Entities:  

Year:  2021        PMID: 34145345     DOI: 10.1038/s41598-021-92504-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  51 in total

1.  Utilization of weedy rice for development of japonica hybrid rice (Oryza sativa L.).

Authors:  Liang Tang; Dian Rong Ma; Zheng Jin Xu; Hua Feng Deng; Wen Fu Chen; Long Ping Yuan
Journal:  Plant Sci       Date:  2011-02-16       Impact factor: 4.729

2.  Genetic diversity and origin of weedy rice (Oryza sativa f. spontanea) populations found in North-eastern China revealed by simple sequence repeat (SSR) markers.

Authors:  Qianjin Cao; Bao-Rong Lu; Hui Xia; Jun Rong; Francesco Sala; Alberto Spada; Fabrizio Grassi
Journal:  Ann Bot       Date:  2006-10-20       Impact factor: 4.357

3.  Contrasting patterns of variation in weedy traits and unique crop features in divergent populations of US weedy rice (Oryza sativa sp.) in Arkansas and California.

Authors:  Kimberly L Kanapeckas; Te-Ming Tseng; Cynthia C Vigueira; Aida Ortiz; William C Bridges; Nilda R Burgos; Albert J Fischer; Amy Lawton-Rauh
Journal:  Pest Manag Sci       Date:  2018-03-05       Impact factor: 4.845

4.  Enhanced photosynthesis endows seedling growth vigour contributing to the competitive dominance of weedy rice over cultivated rice.

Authors:  Lei Dai; Xiaoling Song; Baoye He; Bernal E Valverde; Sheng Qiang
Journal:  Pest Manag Sci       Date:  2017-01-05       Impact factor: 4.845

5.  Comparison of anthocyanin distribution in berries of Haskap (Lonicera caerulea subsp. edulis (Turcz. ex. Herder) Hultén), Miyama-uguisukagura (Lonicera gracilipes Miq.), and their interspecific hybrid using imaging mass spectrometry.

Authors:  Ryohei Fujita; Takahiro Hayasaka; Shigeki Jin; Shu-Ping Hui; Yoichiro Hoshino
Journal:  Plant Sci       Date:  2020-08-06       Impact factor: 4.729

6.  QTL Analysis for Resistance to Blast Disease in U.S. Weedy Rice.

Authors:  Yan Liu; Xinshuai Qi; Dave R Gealy; Kenneth M Olsen; Ana L Caicedo; Yulin Jia
Journal:  Mol Plant Microbe Interact       Date:  2015-07-21       Impact factor: 4.171

7.  Transcriptomics profiling in response to cold stress in cultivated rice and weedy rice.

Authors:  Shixin Guan; Quan Xu; Dianrong Ma; Wenzhong Zhang; Zhengjin Xu; Minghui Zhao; Zhifu Guo
Journal:  Gene       Date:  2018-10-30       Impact factor: 3.688

8.  A Chromosome Segment Substitution Library of Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits.

Authors:  Prasanta K Subudhi; Teresa De Leon; Pradeep K Singh; Arnold Parco; Marc A Cohn; Takuji Sasaki
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

9.  Population genomics identifies the origin and signatures of selection of Korean weedy rice.

Authors:  Qiang He; Kyu-Won Kim; Yong-Jin Park
Journal:  Plant Biotechnol J       Date:  2016-09-30       Impact factor: 9.803

10.  Amyloid Precursor Protein Translation Is Regulated by a 3'UTR Guanine Quadruplex.

Authors:  Ezekiel Crenshaw; Brian P Leung; Chun Kit Kwok; Michal Sharoni; Kalee Olson; Neeraj P Sebastian; Sara Ansaloni; Reinhard Schweitzer-Stenner; Michael R Akins; Philip C Bevilacqua; Aleister J Saunders
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

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  1 in total

1.  OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.

Authors:  Junhui Zhan; Wenli Zou; Shuangyuyan Li; Jichun Tang; Xiang Lu; Lijun Meng; Guoyou Ye
Journal:  Int J Mol Sci       Date:  2022-10-04       Impact factor: 6.208

  1 in total

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