Literature DB >> 34142529

[Reconstruction of gene network associated with Parkinson disease for gene targets search].

Y L Orlov1, A G Galieva2, N G Orlova3, E N Ivanova2, Y A Mozyleva4, A A Anashkina5.   

Abstract

Accumulation of genetic data in the field of Parkinson's disease research culminated in identifying risk factors and confident prediction of the disease occurrence. To find new gene-targets for diagnostics and therapy we have to reconstruct gene network of the disease, to cluster genes in the network, to reveal key (hub) genes with largest number of interactions in the network. Using the on-line bioinformatics tools OMIM, PANTHER, g:Profiler, GeneMANIA, and STRING-DB, we have analyzed the current array of data related to Parkinson's disease, calculated the categories of gene ontologies for a large list of genes, visualized them, and built gene networks containing the identified key objects and their relationships. However, translating the results into biological understanding is still a promising major challenge. The analysis of the genes associated with the disease, the assessment of their place in the gene network (connectivity) allows us to evaluate them as target genes for medicinal effects.

Entities:  

Keywords:  bioinformatics; gene ontology; reconstruction of gene networks

Year:  2021        PMID: 34142529     DOI: 10.18097/PBMC20216703222

Source DB:  PubMed          Journal:  Biomed Khim        ISSN: 2310-6905


  4 in total

1.  Editorial: Association Between Individuals' Genomic Ancestry and Variation in Disease Susceptibility.

Authors:  Ranajit Das; Tatiana V Tatarinova; Elvira R Galieva; Yuriy L Orlov
Journal:  Front Genet       Date:  2022-02-02       Impact factor: 4.599

2.  Editorial: Bioinformatics of Genome Regulation, Volume I.

Authors:  Yuriy L Orlov; Tatiana V Tatarinova; Nina Y Oparina; Elvira R Galieva; Ancha V Baranova
Journal:  Front Genet       Date:  2021-12-06       Impact factor: 4.599

3.  Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools.

Authors:  Natalya V Gubanova; Nina G Orlova; Arthur I Dergilev; Nina Y Oparina; Yuriy L Orlov
Journal:  J Integr Bioinform       Date:  2021-11-16

4.  Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data.

Authors:  Arthur I Dergilev; Nina G Orlova; Oxana B Dobrovolskaya; Yuriy L Orlov
Journal:  J Integr Bioinform       Date:  2021-12-21
  4 in total

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