Literature DB >> 34140699

Identification of phosphosites that alter protein thermal stability.

Ian R Smith1, Kyle N Hess1, Anna A Bakhtina1, Anthony S Valente1, Ricard A Rodríguez-Mias1, Judit Villén2.   

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Year:  2021        PMID： 34140699      PMCID： PMC8783534          DOI： 10.1038/s41592-021-01178-4

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  22 in total

1.  Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-A resolution.

Authors:  Gerwald Jogl; Sharon Rozovsky; Ann E McDermott; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-30       Impact factor: 11.205

2.  A probability-based approach for high-throughput protein phosphorylation analysis and site localization.

Authors:  Sean A Beausoleil; Judit Villén; Scott A Gerber; John Rush; Steven P Gygi
Journal:  Nat Biotechnol       Date:  2006-09-10       Impact factor: 54.908

3.  Semi-supervised learning for peptide identification from shotgun proteomics datasets.

Authors:  Lukas Käll; Jesse D Canterbury; Jason Weston; William Stafford Noble; Michael J MacCoss
Journal:  Nat Methods       Date:  2007-10-21       Impact factor: 28.547

4.  Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis.

Authors:  Koshi Imami; Miha Milek; Boris Bogdanow; Tomoharu Yasuda; Nicolai Kastelic; Henrik Zauber; Yasushi Ishihama; Markus Landthaler; Matthias Selbach
Journal:  Mol Cell       Date:  2018-09-13       Impact factor: 17.970

5.  Comet: an open-source MS/MS sequence database search tool.

Authors:  Jimmy K Eng; Tahmina A Jahan; Michael R Hoopmann
Journal:  Proteomics       Date:  2012-12-04       Impact factor: 3.984

6.  Impact of phosphorylation on thermal stability of proteins.

Authors:  Clément M Potel; Nils Kurzawa; Isabelle Becher; Athanasios Typas; André Mateus; Mikhail M Savitski
Journal:  Nat Methods       Date:  2021-06-17       Impact factor: 28.547

7.  PhosphoSitePlus, 2014: mutations, PTMs and recalibrations.

Authors:  Peter V Hornbeck; Bin Zhang; Beth Murray; Jon M Kornhauser; Vaughan Latham; Elzbieta Skrzypek
Journal:  Nucleic Acids Res       Date:  2014-12-16       Impact factor: 16.971

8.  A resource of variant effect predictions of single nucleotide variants in model organisms.

Authors:  Omar Wagih; Marco Galardini; Bede P Busby; Danish Memon; Athanasios Typas; Pedro Beltrao
Journal:  Mol Syst Biol       Date:  2018-12-20       Impact factor: 11.429

9.  Up-to-date catalogues of yeast protein complexes.

Authors:  Shuye Pu; Jessica Wong; Brian Turner; Emerson Cho; Shoshana J Wodak
Journal:  Nucleic Acids Res       Date:  2008-12-18       Impact factor: 16.971

10.  High throughput discovery of functional protein modifications by Hotspot Thermal Profiling.

Authors:  Jun X Huang; Gihoon Lee; Kate E Cavanaugh; Jae W Chang; Margaret L Gardel; Raymond E Moellering
Journal:  Nat Methods       Date:  2019-08-05       Impact factor: 28.547
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  9 in total

1.  Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.

Authors:  Dustin T King; Jesús E Serrano-Negrón; Yanping Zhu; Christopher L Moore; Matthew D Shoulders; Leonard J Foster; David J Vocadlo
Journal:  J Am Chem Soc       Date:  2022-03-01       Impact factor: 15.419

Review 2.  Strategies for mass spectrometry-based phosphoproteomics using isobaric tagging.

Authors:  Xinyue Liu; Rose Fields; Devin K Schweppe; Joao A Paulo
Journal:  Expert Rev Proteomics       Date:  2021-10-28       Impact factor: 3.940

3.  Small Molecule Arranged Thermal Proximity Coaggregation (smarTPCA)-A Novel Approach to Characterize Protein-Protein Interactions in Living Cells by Similar Isothermal Dose-Responses.

Authors:  Thomas Lenz; Kai Stühler
Journal:  Int J Mol Sci       Date:  2022-05-17       Impact factor: 6.208

4.  A peptidoform based proteomic strategy for studying functions of post-translational modifications.

Authors:  Yansheng Liu
Journal:  Proteomics       Date:  2021-12-23       Impact factor: 3.984

5.  Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling.

Authors:  Qing Lu; Yonghong Zhang; Joakim Hellner; Caterina Giannini; Xiangyu Xu; Jarne Pauwels; Qian Ma; Wim Dejonghe; Huibin Han; Brigitte Van de Cotte; Francis Impens; Kris Gevaert; Ive De Smet; Jiří Friml; Daniel Martinez Molina; Eugenia Russinova
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-07       Impact factor: 12.779

6.  Rewiring of the protein-protein-metabolite interactome during the diauxic shift in yeast.

Authors:  Dennis Schlossarek; Marcin Luzarowski; Ewelina M Sokołowska; Venkatesh P Thirumalaikumar; Lisa Dengler; Lothar Willmitzer; Jennifer C Ewald; Aleksandra Skirycz
Journal:  Cell Mol Life Sci       Date:  2022-10-15       Impact factor: 9.207

7.  Systematic Identification of Protein Phosphorylation-Mediated Interactions.

Authors:  Brendan M Floyd; Kevin Drew; Edward M Marcotte
Journal:  J Proteome Res       Date:  2021-01-21       Impact factor: 4.466

8.  A Bayesian semi-parametric model for thermal proteome profiling.

Authors:  Siqi Fang; Paul D W Kirk; Marcus Bantscheff; Kathryn S Lilley; Oliver M Crook
Journal:  Commun Biol       Date:  2021-06-29

9.  The rise of proteome-wide biophysics.

Authors:  Andre Mateus; Mikhail M Savitski; Ilaria Piazza
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429
  9 in total

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