Literature DB >> 34139306

Assembly and annotation of whole-genome sequence of Fusarium equiseti.

Xueping Li1, Shiyang Xu2, Jungao Zhang3, Minquan Li4.   

Abstract

Fusarium equiseti is a plant pathogen with a wide range of hosts and diverse effects, including probiotic effects. However, the molecular mechanisms underlying these effects remain unclear, hindering its effective utilization. The final assembly included 16 scaffolds of contiguous sequence without gaps. The total sequence length was 40,776,005 bp, and the GC content of 48.01%. In total, we annotated the putative function of 13,134 genes, accounting for 94.97% of the candidate genes. We identified two and 23 candidate genes that are likely involved in the production of mycotoxins zearalenone and trichothecene, respectively. A comparative genomic analysis supported the high quality of the F. equiseti assembly. Our comprehensive analysis of whole-genome sequence will serve as a valuable resource for future studies of expression, regulation, function and evolution of the genes of F. equiseti as well as studies into disease prevention and control.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Fusarium; Phylogeny; Trichothecene; Whole-genome sequencing; Zearalenone

Mesh:

Year:  2021        PMID: 34139306     DOI: 10.1016/j.ygeno.2021.06.019

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  1 in total

1.  Genome, genetic evolution, and environmental adaptation mechanisms of Schizophyllum commune in deep subseafloor coal-bearing sediments.

Authors:  Xuan Liu; Xin Huang; Chen Chu; Hui Xu; Long Wang; Yarong Xue; Zain Ul Arifeen Muhammad; Fumio Inagaki; Changhong Liu
Journal:  iScience       Date:  2022-05-18
  1 in total

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