Literature DB >> 34139163

Perfect adaptation in biology.

Mustafa H Khammash1.   

Abstract

A distinctive feature of many biological systems is their ability to adapt to persistent stimuli or disturbances that would otherwise drive them away from a desirable steady state. The resulting stasis enables organisms to function reliably while being subjected to very different external environments. This perspective concerns a stringent type of biological adaptation, robust perfect adaptation (RPA), that is resilient to certain network and parameter perturbations. As in engineered control systems, RPA requires that the regulating network satisfy certain structural constraints that cannot be avoided. We elucidate these ideas using biological examples from systems and synthetic biology. We then argue that understanding the structural constraints underlying RPA allows us to look past implementation details and offers a compelling means to unravel regulatory biological complexity.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  antithetic integral control; cybergenetics; homeostasis; incoherent feedforward; integral feedback; regulation; robust perfect adaptation

Mesh:

Year:  2021        PMID: 34139163     DOI: 10.1016/j.cels.2021.05.020

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  6 in total

1.  Synthetic robust perfect adaptation achieved by negative feedback coupling with linear weak positive feedback.

Authors:  Zhi Sun; Weijia Wei; Mingyue Zhang; Wenjia Shi; Yeqing Zong; Yihua Chen; Xiaojing Yang; Bo Yu; Chao Tang; Chunbo Lou
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

2.  A genetic mammalian proportional-integral feedback control circuit for robust and precise gene regulation.

Authors:  Timothy Frei; Ching-Hsiang Chang; Maurice Filo; Asterios Arampatzis; Mustafa Khammash
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-10       Impact factor: 12.779

3.  A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance.

Authors:  Maurice Filo; Sant Kumar; Mustafa Khammash
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

4.  DOPA Homeostasis by Dopamine: A Control-Theoretic View.

Authors:  Rune Kleppe; Qaiser Waheed; Peter Ruoff
Journal:  Int J Mol Sci       Date:  2021-11-28       Impact factor: 5.923

5.  Kinetics and mechanisms of catalyzed dual-E (antithetic) controllers.

Authors:  Qaiser Waheed; Huimin Zhou; Peter Ruoff
Journal:  PLoS One       Date:  2022-08-18       Impact factor: 3.752

6.  Vertex results for the robust analysis of uncertain biochemical systems.

Authors:  Franco Blanchini; Patrizio Colaneri; Giulia Giordano; Irene Zorzan
Journal:  J Math Biol       Date:  2022-09-19       Impact factor: 2.164

  6 in total

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