Literature DB >> 34138754

Untargeted metabolomics and infrared ion spectroscopy identify biomarkers for pyridoxine-dependent epilepsy.

Udo Fh Engelke1, Rianne E van Outersterp2, Jona Merx3, Fred Amg van Geenen2, Arno van Rooij1, Giel Berden2, Marleen Cdg Huigen1, Leo Aj Kluijtmans1, Tessa Ma Peters1,4, Hilal H Al-Shekaili5, Blair R Leavitt5, Erik de Vrieze6, Sanne Broekman6, Erwin van Wijk6, Laura A Tseng7, Purva Kulkarni1, Floris Pjt Rutjes3, Jasmin Mecinović3,8, Eduard A Struys9, Laura A Jansen10, Sidney M Gospe11,12, Saadet Mercimek-Andrews13,14, Keith Hyland15, Michèl Aap Willemsen16, Levinus A Bok17, Clara Dm van Karnebeek7,18,19, Ron A Wevers1, Thomas J Boltje3, Jos Oomens2,20, Jonathan Martens2, Karlien Lm Coene1.   

Abstract

BackgroundPyridoxine-dependent epilepsy (PDE-ALDH7A1) is an inborn error of lysine catabolism that presents with refractory epilepsy in newborns. Biallelic ALDH7A1 variants lead to deficiency of α-aminoadipic semialdehyde dehydrogenase/antiquitin, resulting in accumulation of piperideine-6-carboxylate (P6C), and secondary deficiency of the important cofactor pyridoxal-5'-phosphate (PLP, active vitamin B6) through its complexation with P6C. Vitamin B6 supplementation resolves epilepsy in patients, but intellectual disability may still develop. Early diagnosis and treatment, preferably based on newborn screening, could optimize long-term clinical outcome. However, no suitable PDE-ALDH7A1 newborn screening biomarkers are currently available.MethodsWe combined the innovative analytical methods untargeted metabolomics and infrared ion spectroscopy to discover and identify biomarkers in plasma that would allow for PDE-ALDH7A1 diagnosis in newborn screening.ResultsWe identified 2S,6S-/2S,6R-oxopropylpiperidine-2-carboxylic acid (2-OPP) as a PDE-ALDH7A1 biomarker, and confirmed 6-oxopiperidine-2-carboxylic acid (6-oxoPIP) as a biomarker. The suitability of 2-OPP as a potential PDE-ALDH7A1 newborn screening biomarker in dried bloodspots was shown. Additionally, we found that 2-OPP accumulates in brain tissue of patients and Aldh7a1-knockout mice, and induced epilepsy-like behavior in a zebrafish model system.ConclusionThis study has opened the way to newborn screening for PDE-ALDH7A1. We speculate that 2-OPP may contribute to ongoing neurotoxicity, also in treated PDE-ALDH7A1 patients. As 2-OPP formation appears to increase upon ketosis, we emphasize the importance of avoiding catabolism in PDE-ALDH7A1 patients.FundingSociety for Inborn Errors of Metabolism for Netherlands and Belgium (ESN), United for Metabolic Diseases (UMD), Stofwisselkracht, Radboud University, Canadian Institutes of Health Research, Dutch Research Council (NWO), and the European Research Council (ERC).

Entities:  

Keywords:  Diagnostics; Epilepsy; Genetic diseases; Metabolism

Year:  2021        PMID: 34138754      PMCID: PMC8321577          DOI: 10.1172/JCI148272

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  39 in total

1.  Infrared ion spectroscopy in a modified quadrupole ion trap mass spectrometer at the FELIX free electron laser laboratory.

Authors:  Jonathan Martens; Giel Berden; Christoph R Gebhardt; Jos Oomens
Journal:  Rev Sci Instrum       Date:  2016-10       Impact factor: 1.523

2.  Novel therapy for pyridoxine dependent epilepsy due to ALDH7A1 genetic defect: L-arginine supplementation alternative to lysine-restricted diet.

Authors:  Saadet Mercimek-Mahmutoglu; Dawn Cordeiro; Vivian Cruz; Keith Hyland; Eduard A Struys; Lianna Kyriakopoulou; Eva Mamak
Journal:  Eur J Paediatr Neurol       Date:  2014-07-27       Impact factor: 3.140

3.  Phenotype, biochemical features, genotype and treatment outcome of pyridoxine-dependent epilepsy.

Authors:  Amal Al Teneiji; Theodora U J Bruun; Dawn Cordeiro; Jaina Patel; Michal Inbar-Feigenberg; Shelly Weiss; Eduard Struys; Saadet Mercimek-Mahmutoglu
Journal:  Metab Brain Dis       Date:  2016-11-23       Impact factor: 3.584

4.  Folinic acid responsive seizures: a new syndrome?

Authors:  K Hyland; N R Buist; B R Powell; G F Hoffman; D Rating; J McGrath; I N Acworth
Journal:  J Inherit Metab Dis       Date:  1995       Impact factor: 4.982

5.  Metabolism of lysine in alpha-aminoadipic semialdehyde dehydrogenase-deficient fibroblasts: evidence for an alternative pathway of pipecolic acid formation.

Authors:  Eduard A Struys; Cornelis Jakobs
Journal:  FEBS Lett       Date:  2010-01-04       Impact factor: 4.124

Review 6.  Pyridoxine-Dependent Epilepsy: An Expanding Clinical Spectrum.

Authors:  Clara D M van Karnebeek; Sylvia A Tiebout; Jikkemien Niermeijer; Bwee Tien Poll-The; Aisha Ghani; Curtis R Coughlin; Johan L K Van Hove; Jost Wigand Richter; Hans Juergen Christen; Renata Gallagher; Hans Hartmann; Sylvia Stockler-Ipsiroglu
Journal:  Pediatr Neurol       Date:  2016-01-11       Impact factor: 3.372

7.  A novel mouse model for pyridoxine-dependent epilepsy due to antiquitin deficiency.

Authors:  Hilal H Al-Shekaili; Terri L Petkau; Izabella Pena; Tess C Lengyell; Nanda M Verhoeven-Duif; Jolita Ciapaite; Marjolein Bosma; Martijn van Faassen; Ido P Kema; Gabriella Horvath; Colin Ross; Elizabeth M Simpson; Jan M Friedman; Clara van Karnebeek; Blair R Leavitt
Journal:  Hum Mol Genet       Date:  2020-11-25       Impact factor: 6.150

8.  Pyridoxine-Dependent Epilepsy in Zebrafish Caused by Aldh7a1 Deficiency.

Authors:  Izabella A Pena; Yann Roussel; Kate Daniel; Kevin Mongeon; Devon Johnstone; Hellen Weinschutz Mendes; Marjolein Bosma; Vishal Saxena; Nathalie Lepage; Pranesh Chakraborty; David A Dyment; Clara D M van Karnebeek; Nanda Verhoeven-Duif; Tuan Vu Bui; Kym M Boycott; Marc Ekker; Alex MacKenzie
Journal:  Genetics       Date:  2017-10-23       Impact factor: 4.562

9.  Molecular identification in metabolomics using infrared ion spectroscopy.

Authors:  Jonathan Martens; Giel Berden; Rianne E van Outersterp; Leo A J Kluijtmans; Udo F Engelke; Clara D M van Karnebeek; Ron A Wevers; Jos Oomens
Journal:  Sci Rep       Date:  2017-06-13       Impact factor: 4.379

10.  Simultaneous quantification of alpha-aminoadipic semialdehyde, piperideine-6-carboxylate, pipecolic acid and alpha-aminoadipic acid in pyridoxine-dependent epilepsy.

Authors:  Jiao Xue; Junjuan Wang; Pan Gong; Minhang Wu; Wenshuang Yang; Shiju Jiang; Ye Wu; Yuwu Jiang; Yuehua Zhang; Tatiana Yuzyuk; Hong Li; Zhixian Yang
Journal:  Sci Rep       Date:  2019-08-06       Impact factor: 4.379

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  4 in total

1.  A case for newborn screening for pyridoxine-dependent epilepsy.

Authors:  Curtis R Coughlin; Laura A Tseng; Clara D M van Karnebeek
Journal:  Cold Spring Harb Mol Case Stud       Date:  2022-03-24

2.  Identification of Δ-1-pyrroline-5-carboxylate derived biomarkers for hyperprolinemia type II.

Authors:  Jona Merx; Rianne E van Outersterp; Udo F H Engelke; Veronique Hendriks; Ron A Wevers; Marleen C D G Huigen; Huub W A H Waterval; Irene M L W Körver-Keularts; Jasmin Mecinović; Floris P J T Rutjes; Jos Oomens; Karlien L M Coene; Jonathan Martens; Thomas J Boltje
Journal:  Commun Biol       Date:  2022-09-21

Review 3.  How to proceed after "negative" exome: A review on genetic diagnostics, limitations, challenges, and emerging new multiomics techniques.

Authors:  Saskia B Wortmann; Machteld M Oud; Mariëlle Alders; Karlien L M Coene; Saskia N van der Crabben; René G Feichtinger; Alejandro Garanto; Alex Hoischen; Mirjam Langeveld; Dirk Lefeber; Johannes A Mayr; Charlotte W Ockeloen; Holger Prokisch; Richard Rodenburg; Hans R Waterham; Ron A Wevers; Bart P C van de Warrenburg; Michel A A P Willemsen; Nicole I Wolf; Lisenka E L M Vissers; Clara D M van Karnebeek
Journal:  J Inherit Metab Dis       Date:  2022-05-22       Impact factor: 4.750

4.  Personalized medicine for rare neurogenetic disorders: can we make it happen?

Authors:  Agnies M van Eeghen; Hilgo Bruining; Nicole I Wolf; Arthur A Bergen; Riekelt H Houtkooper; Mieke M van Haelst; Clara D van Karnebeek
Journal:  Cold Spring Harb Mol Case Stud       Date:  2022-03-24
  4 in total

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