Literature DB >> 34138474

High-resolution melting curve FRET-PCR rapidly identifies SARS-CoV-2 mutations.

Subarna Barua1, Monirul Hoque1, Patrick John Kelly2, Jianfa Bai3, Gregg Hanzlicek3, Lance Noll3, Heather Walz1,4, Calvin Johnson1, Constantinos Kyriakis1, Chengming Wang1.   

Abstract

Reverse transcription FRET-PCRs were designed against two most common mutations in the SARS-CoV-2 (A23403G in the spike protein; C14408T in the RNA-dependent RNA polymerase). Based on high-resolution melting curve analysis, the RT FRET-PCRs identified the mutations in ATCC control viruses, and feline and human clinical samples. All major makes of PCR machines can perform melting curve analysis and thus further specifically designed FRET-PCRs could enable active surveillance for mutations and variants in countries where genome sequencing is not readily available. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Entities:  

Keywords:  FRET-PCR; High-resolution melting curve analysis; Mutations; SARS-CoV-2

Year:  2021        PMID: 34138474     DOI: 10.1002/jmv.27139

Source DB:  PubMed          Journal:  J Med Virol        ISSN: 0146-6615            Impact factor:   2.327


  4 in total

1.  Identification of the SARS-CoV-2 Delta variant C22995A using a high-resolution melting curve RT-FRET-PCR.

Authors:  Subarna Barua; Jianfa Bai; Patrick John Kelly; Gregg Hanzlicek; Lance Noll; Calvin Johnson; Ji-Hang Yin; Chengming Wang
Journal:  Emerg Microbes Infect       Date:  2022-12       Impact factor: 7.163

2.  Validation of a novel molecular assay to the diagnostic of COVID-19 based on real time PCR with high resolution melting.

Authors:  Beatriz Iandra da Silva Ferreira; Natália Lins da Silva-Gomes; Wagner Luis da Costa Nunes Pimentel Coelho; Vanessa Duarte da Costa; Vanessa Cristine de Souza Carneiro; Rafael Lopes Kader; Marisa Pimentel Amaro; Lívia Melo Villar; Fábio Miyajima; Soniza Vieira Alves-Leon; Vanessa Salete de Paula; Luciane Almeida Amado Leon; Otacilio Cruz Moreira
Journal:  PLoS One       Date:  2021-11-22       Impact factor: 3.240

3.  Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification.

Authors:  Priscilla S-W Yeung; Hannah Wang; Mamdouh Sibai; Daniel Solis; Fumiko Yamamoto; Naomi Iwai; Becky Jiang; Nathan Hammond; Bernadette Truong; Selamawit Bihon; Suzette Santos; Marilyn Mar; Claire Mai; Kenji O Mfuh; Jacob A Miller; ChunHong Huang; Malaya K Sahoo; James L Zehnder; Benjamin A Pinsky
Journal:  J Clin Microbiol       Date:  2022-04-25       Impact factor: 11.677

Review 4.  Current diagnostic approaches to detect two important betacoronaviruses: Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).

Authors:  Zhi Xiong Chong; Winnie Pui Pui Liew; Hui Kian Ong; Chean Yeah Yong; Chong Seng Shit; Wan Yong Ho; Stephanie Y L Ng; Swee Keong Yeap
Journal:  Pathol Res Pract       Date:  2021-07-24       Impact factor: 3.250

  4 in total

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