Literature DB >> 34130579

An overview of lipidomics utilizing cadaver derived biological samples.

Luheng Lyu1,2, Neel Sonik1,2, Sanjoy Bhattacharya1,2.   

Abstract

INTRODUCTION: We present lipidomic studies that have utilized cadaveric biological samples, including tissues and bodily fluids (excluding blood or serum). Analyses of lipids from cadaveric-derived tissues play vital roles in many different fields, such as in anthropogeny to understand food habits of ancient people, in forensics for postmortem analyses, and in biomedical research to study human diseases. AREAS COVERED: The goal of the review is to demonstrate how cadavers can be utilized for study of lipidome to get biological insight in different fields. Several important considerations need to be made when analyzing lipids from cadaver samples. For example, what important postmortem changes occur due to environmental or other intrinsic factors that introduce deviations in the observed differences versus true differences? Do these factors affect distinct classes of lipids differently? How do we arrive at a reasonable level of certainty that the observed differences are truly biological rather than artifacts of sample collection, changes during transportation, or variations in analytical procedures? These are pressing questions that need to be addressed when performing lipidomics investigations utilizing postmortem tissues, which inherently presents hurdles and unknowns beginning with harvesting methods, transportation logistics, and at analytical techniques. In our review, we have purposefully omitted blood and serum studies since they pose greater challenges in this regard. Several studies have been carried out with cadaveric tissues and fluids that support the successful use of cases of these samples; however, many control studies are still necessary to provide insight into full potential of the cadaveric tissue and fluid resources. Most importantly, additional control studies will allow us to gain important insights into the opportunities lipidomics presents for biomedical studies of complex human disease and disorders. Another goal of the review is to generate awareness about limitations and pitfalls of use of cadaver materials for study of lipidome. EXPERT OPINION: We comment on the current state of lipidomics studies that utilize cadaveric tissues, provide a few pertinent examples, and discuss perspectives on both future technological directions and the applications they will enable.

Entities:  

Keywords:  Lipidomics; cadaveric; mass spectrometry; postmortem

Mesh:

Substances:

Year:  2021        PMID: 34130579      PMCID: PMC8363591          DOI: 10.1080/14789450.2021.1941894

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   4.250


  57 in total

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2.  Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers.

Authors:  Kai Schuhmann; Ronny Herzog; Dominik Schwudke; Wolfgang Metelmann-Strupat; Stefan R Bornstein; Andrej Shevchenko
Journal:  Anal Chem       Date:  2011-06-27       Impact factor: 6.986

Review 3.  Use of Multiplied, Added, Subtracted and/or FiTted Inversion Recovery (MASTIR) pulse sequences.

Authors:  Ya-Jun Ma; Shujuan Fan; Hongda Shao; Jiang Du; Nikolaus M Szeverenyi; Ian R Young; Graeme M Bydder
Journal:  Quant Imaging Med Surg       Date:  2020-06

4.  Analysis of sphingolipid composition in human vitreous from control and diabetic individuals.

Authors:  Lynda A Wilmott; Richard C Grambergs; Jeremy C Allegood; Timothy J Lyons; Nawajes Mandal
Journal:  J Diabetes Complications       Date:  2018-12-14       Impact factor: 2.852

5.  Automated lipid identification and quantification by multidimensional mass spectrometry-based shotgun lipidomics.

Authors:  Kui Yang; Hua Cheng; Richard W Gross; Xianlin Han
Journal:  Anal Chem       Date:  2009-06-01       Impact factor: 6.986

Review 6.  A neuroscientist's guide to lipidomics.

Authors:  Daniele Piomelli; Giuseppe Astarita; Rao Rapaka
Journal:  Nat Rev Neurosci       Date:  2007-10       Impact factor: 34.870

7.  Cholesterol in mouse retina originates primarily from in situ de novo biosynthesis.

Authors:  Joseph B Lin; Natalia Mast; Ilya R Bederman; Yong Li; Henri Brunengraber; Ingemar Björkhem; Irina A Pikuleva
Journal:  J Lipid Res       Date:  2015-12-02       Impact factor: 5.922

8.  Mass spectrometric analyses of phosphatidylcholines in alkali-exposed corneal tissue.

Authors:  Ashley M Crane; Hong-Uyen Hua; Andrew D Coggin; Bogdan G Gugiu; Byron L Lam; Sanjoy K Bhattacharya
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-10-23       Impact factor: 4.799

9.  Lipid composition of the human eye: are red blood cells a good mirror of retinal and optic nerve fatty acids?

Authors:  Niyazi Acar; Olivier Berdeaux; Stéphane Grégoire; Stéphanie Cabaret; Lucy Martine; Philippe Gain; Gilles Thuret; Catherine P Creuzot-Garcher; Alain M Bron; Lionel Bretillon
Journal:  PLoS One       Date:  2012-04-09       Impact factor: 3.240

10.  Lipidomic Analysis of Postmortem Prefrontal Cortex Phospholipids Reveals Changes in Choline Plasmalogen Containing Docosahexaenoic Acid and Stearic Acid Between Cases With and Without Alzheimer's Disease.

Authors:  Yurika Otoki; Shunji Kato; Kiyotaka Nakagawa; Danielle J Harvey; Lee-Way Jin; Britany N Dugger; Ameer Y Taha
Journal:  Neuromolecular Med       Date:  2021-01-21       Impact factor: 4.103

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1.  Infant urinary metabolomic profile in a fatal acute methadone intoxication.

Authors:  Alberto Chighine; Michele Porcu; Giulio Ferino; Nicola Lenigno; Claudia Trignano; Ernesto d'Aloja; Emanuela Locci
Journal:  Int J Legal Med       Date:  2022-01-11       Impact factor: 2.686

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