Literature DB >> 34127402

Immu-Mela: An open resource for exploring immunotherapy-related multidimensional genomic profiles in melanoma.

Jing Yang1, Shilin Zhao1, Jing Wang1, Quanhu Sheng1, Qi Liu2, Yu Shyr3.   

Abstract

There are increasing studies aimed to reveal genomic hallmarks predictive of immune checkpoint blockade (ICB) treatment response, which generated a large number of data and provided an unprecedented opportunity to identify response-related features and evaluate their robustness across cohorts. However, those valuable data sets are not easily accessible to the research community. To take full advantage of existing large-scale immuno-genomic profiles, we developed Immu-Mela (http://bioinfo.vanderbilt.edu/database/Immu-Mela/), a multidimensional immuno-genomic portal that provides interactive exploration of associations between ICB responsiveness and multi-omics features in melanoma, including genetic, transcriptomics, immune cells, and single-cell populations. Immu-Mela also enables integrative analysis of any two genomic features. We demonstrated the value of Immu-Mela by identifying known and novel genomic features associated with ICB response. In addition, Immu-Mela allows users to upload their data sets (unrestricted to any cancer types) and co-analyze with existing data to identify and validate signatures of interest. Immu-Mela reduces barriers between researchers and complex genomic data, facilitating discoveries in cancer immunotherapy.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Biomarker; CTLA-4 blockade; Immune checkpoint; Immunotherapy; Melanoma; Multidimensional genomics; PD-1/PD-L1 blockade

Mesh:

Substances:

Year:  2021        PMID: 34127402      PMCID: PMC8349898          DOI: 10.1016/j.jgg.2021.03.016

Source DB:  PubMed          Journal:  J Genet Genomics        ISSN: 1673-8527            Impact factor:   4.275


  52 in total

1.  Genetic basis for clinical response to CTLA-4 blockade in melanoma.

Authors:  Alexandra Snyder; Vladimir Makarov; Taha Merghoub; Jianda Yuan; Jedd D Wolchok; Timothy A Chan; Jesse M Zaretsky; Alexis Desrichard; Logan A Walsh; Michael A Postow; Phillip Wong; Teresa S Ho; Travis J Hollmann; Cameron Bruggeman; Kasthuri Kannan; Yanyun Li; Ceyhan Elipenahli; Cailian Liu; Christopher T Harbison; Lisu Wang; Antoni Ribas
Journal:  N Engl J Med       Date:  2014-11-19       Impact factor: 91.245

2.  Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab.

Authors:  Nadeem Riaz; Jonathan J Havel; Vladimir Makarov; Alexis Desrichard; Walter J Urba; Jennifer S Sims; F Stephen Hodi; Salvador Martín-Algarra; Rajarsi Mandal; William H Sharfman; Shailender Bhatia; Wen-Jen Hwu; Thomas F Gajewski; Craig L Slingluff; Diego Chowell; Sviatoslav M Kendall; Han Chang; Rachna Shah; Fengshen Kuo; Luc G T Morris; John-William Sidhom; Jonathan P Schneck; Christine E Horak; Nils Weinhold; Timothy A Chan
Journal:  Cell       Date:  2017-10-12       Impact factor: 41.582

3.  TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells.

Authors:  Taiwen Li; Jingyu Fan; Binbin Wang; Nicole Traugh; Qianming Chen; Jun S Liu; Bo Li; X Shirley Liu
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

Review 4.  Monitoring immune-checkpoint blockade: response evaluation and biomarker development.

Authors:  Mizuki Nishino; Nikhil H Ramaiya; Hiroto Hatabu; F Stephen Hodi
Journal:  Nat Rev Clin Oncol       Date:  2017-06-27       Impact factor: 66.675

5.  Emerging concepts of T cell metabolism as a target of immunotherapy.

Authors:  Chih-Hao Chang; Erika L Pearce
Journal:  Nat Immunol       Date:  2016-04       Impact factor: 25.606

6.  Pan-tumor genomic biomarkers for PD-1 checkpoint blockade-based immunotherapy.

Authors:  Razvan Cristescu; Robin Mogg; Mark Ayers; Andrew Albright; Erin Murphy; Jennifer Yearley; Xinwei Sher; Xiao Qiao Liu; Hongchao Lu; Michael Nebozhyn; Chunsheng Zhang; Jared K Lunceford; Andrew Joe; Jonathan Cheng; Andrea L Webber; Nageatte Ibrahim; Elizabeth R Plimack; Patrick A Ott; Tanguy Y Seiwert; Antoni Ribas; Terrill K McClanahan; Joanne E Tomassini; Andrey Loboda; David Kaufman
Journal:  Science       Date:  2018-10-12       Impact factor: 47.728

7.  Profiling Tumor Infiltrating Immune Cells with CIBERSORT.

Authors:  Binbin Chen; Michael S Khodadoust; Chih Long Liu; Aaron M Newman; Ash A Alizadeh
Journal:  Methods Mol Biol       Date:  2018

8.  B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma.

Authors:  Johannes Griss; Wolfgang Bauer; Christine Wagner; Martin Simon; Minyi Chen; Katharina Grabmeier-Pfistershammer; Margarita Maurer-Granofszky; Florian Roka; Thomas Penz; Christoph Bock; Gao Zhang; Meenhard Herlyn; Katharina Glatz; Heinz Läubli; Kirsten D Mertz; Peter Petzelbauer; Thomas Wiesner; Markus Hartl; Winfried F Pickl; Rajasekharan Somasundaram; Peter Steinberger; Stephan N Wagner
Journal:  Nat Commun       Date:  2019-09-13       Impact factor: 14.919

9.  Dynamic metrics-based biomarkers to predict responders to anti-PD-1 immunotherapy.

Authors:  Can Liu; Hua He; Xiaobing Li; Maureen A Su; Yanguang Cao
Journal:  Br J Cancer       Date:  2018-12-27       Impact factor: 7.640

10.  B Cells Improve Overall Survival in HPV-Associated Squamous Cell Carcinomas and Are Activated by Radiation and PD-1 Blockade.

Authors:  Sangwoo S Kim; Sarek Shen; Sayuri Miyauchi; P Dominick Sanders; Ida Franiak-Pietryga; Loren Mell; J Silvio Gutkind; Ezra E W Cohen; Joseph A Califano; Andrew B Sharabi
Journal:  Clin Cancer Res       Date:  2020-03-19       Impact factor: 13.801

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