| Literature DB >> 34124335 |
Orly Goldstein1, Mali Gana-Weisz1, Tamara Shiner2,3,4, Reut Attar1, Yael Mordechai1, Yedael Y Waldman5, Anat Bar-Shira1, Avner Thaler3,4,6, Tanya Gurevich3,4, Anat Mirelman3,4,6, Nir Giladi3,4,6, Avi Orr-Urtreger1,4.
Abstract
INTRODUCTION THE: GBA-N370S mutation is one of the most frequent risk factors for dementia with Lewy bodies (DLB) and Parkinson's disease (PD). We looked for genetic variations that contribute to the outcome in N370S-carriers, whether PD or DLB.Entities:
Keywords: GBA; KIF17; Parkinson's disease; dementia with Lewy bodies; risk allele
Year: 2021 PMID: 34124335 PMCID: PMC8176903 DOI: 10.1002/dad2.12143
Source DB: PubMed Journal: Alzheimers Dement (Amst) ISSN: 2352-8729
FIGURE 1Haplotype analysis of the extended PINK1‐hit region. A 1.8 Mb interval with 87 unique single nucleotide variants (SNVs) haplotype is identified in five dementia with Lewy bodies (DLB) patients carrying the GBA‐N370S mutation, encompassing 29 genes. A, Recombination is observed at the 5′ end in chromosome 1, at position 20116198, with different SNVs observed among the five carriers (three individuals carrying one haplotype and two carrying a second haplotype). A recombination is also observed at the 3′ end, position 2021914692, with one patient carrying a different haplotype then the other four patients. Only some of the 87 unique variants are presented. B, Schematic scaled presentation of the 29 genes within this haplotype interval. KIF17 (red) is transcribed from the complement DNA strand
Associations and odds ratios of KIF17‐R869C in dementia with Lewy bodies disease and Parkinson's disease
| Disease status (PD = 0, DLB = 1) | Logistic regression analysis results (DLB compared to PD) | ||||||
|---|---|---|---|---|---|---|---|
| DLB | PD | Beta | S.E. |
| OR (Exp(Beta)) | 95% CI of OR | |
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| Number | 20 | 124 | |||||
| Sex, female (%) (M = 0, F = 1) | 5 (25.0) | 49 (39.5) | −1.215 | 0.689 | .078 | 0.30 | 0.08‐1.15 |
| Average AAO (SD) | 68.95 (8.5) | 59.47 (10.6) | 0.133 | 0.037 |
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| 5 (25.0) | 2 (1.6) | 4.251 | 1.228 |
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| Number | 26 | 140 | |||||
| Sex, female (%) (M = 0, F = 1) | 7 (26.9) | 57 (40.7) | −0.842 | 0.546 | .123 | 0.43 | 0.15‐1.26 |
| Average AAO (SD) | 67.69 (9.3) | 59.22 (10.8) | 0.099 | 0.027 |
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| 5 (19.2) | 2 (1.4) | 3.507 | 1.053 |
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| Number | 68 | 787 | |||||
| Sex, female (%) (M = 0, F = 1) | 18 (26.5) | 297 (37.1) | −0.608 | 0.296 |
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| Average AAO (SD) | 70.96 (5.9) | 61.61 (11.0) | 0.099 | 0.015 |
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| 3 (4.4) | 18 (2.3) | 0.834 | 0.683 | .222 | 2.30 | 0.60‐8.78 |
Abbreviations: AAO, age at onset; AJ, Ashkenazi Jew; CI, confidence interval; DLB, dementia with Lewy bodies disease; OD, odds ratio; PD, Parkinson's disease; SD, standard deviation.
AAO was missing for 2 PD patients.
All KIF17 mutation carriers were non‐carriers of any of the GBA founder mutations or the LRRK2‐G2019S mutation.
FIGURE 2The evolutionary conservation of KIF17‐869‐arginine (A), and the predicted effect the 869‐cytosine mutation on the protein secondary structure (B), support its pathogenicity. A, Multiple sequence alignments and evolutionary constrained regions (ECRs) of KIF17 generated by Aminode. Upper panel presents the full KIF17 protein and the lower panel the mutated region, demonstrating that KIF17‐R869 is highly conserved during evolution. The red line represents the relative rate of amino acid substitution calculated at each protein position. Local minima (highlighted by yellow bars above the graph) are ECRs with relatively low amino acid substitution rates. Peaks (local maxima) indicate regions with relatively high substitution rates. B, Phyre2 modeling for protein secondary structure of wild‐type KIF17‐R869 (upper panel) and mutant KIF17‐C869 (lower panel). Arrow is depicting the difference in secondary protein structure, changing an alpha‐helix (green in the wild‐type protein) to coil (black line in the mutant protein)