| Literature DB >> 34115613 |
Gal Mazor1, Dmitri Smirnov1,2,3, Hila Ben David1, Ekaterina Khrameeva2, Debra Toiber1,3, Barak Rotblat1,4.
Abstract
Aging is a factor associated with poor prognosis in glioblastoma (GBM). It is therefore important to understand the molecular features of aging contributing to GBM morbidity. TP73-AS1 is a long noncoding RNA (lncRNA) over expressed in GBM tumors shown to promote resistance to the chemotherapeutic temozolomide (TMZ), and tumor aggressiveness. How the expression of TP73-AS1 is regulated is not known, nor is it known if its expression is associated with aging. By analyzing transcriptional data obtained from natural and pathological aging brain, we found that the expression of TP73-AS1 is high in pathological and naturally aging brains. YY1 physically associates with the promoter of TP73-AS1 and we found that along with TP73-AS1, YY1 is induced by TMZ. We found that the TP73-AS1 promoter is activated by TMZ, and by YY1 over expression. Using CRISPRi to deplete YY1, we found that YY1 promotes up regulation of TP73-AS1 and the activation of its promoter during TMZ treatment. In addition, we identified two putative YY1 binding sites within the TP73-AS1 promoter, and used mutagenesis to find that they are essential for TMZ mediated promoter activation. Together, our data positions YY1 as an important TP73-AS1 regulator, demonstrating that TP73-AS1 is expressed in the natural and pathological aging brain, including during neurodegeneration and cancer. Our findings advance our understanding of TP73-AS1 expression, bringing forth a new link between TMZ resistance and aging, both of which contribute to GBM morbidity.Entities:
Keywords: glioblastoma; long noncoding RNA
Mesh:
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Year: 2021 PMID: 34115613 PMCID: PMC8221307 DOI: 10.18632/aging.203182
Source DB: PubMed Journal: Aging (Albany NY) ISSN: 1945-4589 Impact factor: 5.682
Figure 1(A) The levels of TP73-AS1 in the old vs. young brain are shown. Data were obtained from the R2 website and the indicated dataset (GSE48350). (B) The correlation between the expression of TP73-AS1 and age in the brain was determined using R2 and indicated dataset (GSE48350).
Figure 2(A) The levels of TP73-AS1 in Alzheimer’s (AD) vs. normal brain are shown. Data were obtained from R2 and the Cotman dataset (GSE48350). In both (A, B) panels, asterisks indicate statistically significant differences as calculated by the two-sample Wilcoxon test (*p < 0.05; NS, non-significant). (B) The levels of TP73-AS1 in Alzheimer’s vs. normal brain are shown. Data were obtained from R2 and the Salomon dataset (GSE5281).
Figure 3(A) TP73-AS1 levels in the indicated cell lines were measured using qRT-PCR. * p<0.05 in the two-tailed t-test. (B) The genomic region of the putative TP73-AS1 promoter was identified using the UCSC browser. H3K27 acetylation and TF ChIP-SEQ data obtained from ENCODE are shown. Transcriptional start site (TSS), intron 1, and exon 1 are shown. The two promoter regions used in this study are highlighted. (C) Promoter activity assay was performed in the indicated cell lines using the dual luciferase assay. * p<0.05 in the two tailed t-test. (D) Promoter activity assay was performed in the indicated cell lines using the dual luciferase assay. * p<0.05 in the two tailed t-test.
Figure 4YY1 promotes the expression of (A) TF binding sites statistically enriched in the list of genes up-regulated upon TMZ treatment in G7 cells were found using oPPOSUM (full list in Supplementary Table 1). Key TFs known to play a role in GBM are indicated. (B) Co-expression between the indicated TFs and TP73-AS1 in GBM stem cells is shown. Data obtained using R2 and the Pollard dataset (GSE15209) [48]. (C) The levels of the indicated transcripts in SHY5Y cells treated or not with TMZ were measured using qRT-PCR. * p<0.05 in the two-tailed t-test; NS, not significant. (D) The levels of the indicated transcripts in SHY5Y cells transfected with the indicated constructs were measured using RT-qPCR. * p<0.05 in the two-tailed t-test; NS, not significant. (E) The indicated cell lines were engineered to express KREB-dCAS9 and gRNAs targeting YY1. Cells were treated with DOX for 10 days, to induce KREB-dCAS9. The levels of the indicated transcripts were measured using qRT-PCR. * p<0.05 in the two-tailed t-test; NS, not significant.
Figure 5YY1 directly promotes (A) The indicated promoter activity was measured in SHY5Y cells over expressing YY1 or empty vector. * p<0.05 in the two-tailed t-test; NS, not significant. (B) CRISPRi SHY5Y cells were treated with DOX for 10 days to induce YY1 KD. Cells were treated with TMZ (750 μM for 48 hours). The activity of TP73-AS1-promoter-824 was measured using the dual luciferase assay. * p<0.05 in the two-tailed t-test; NS, not significant. (C) Schematic representation of the WT or mutant YY1 binding sites within the TP73-AS1 promoter luciferase construct. (D) SHY5Y cells expressing WT or mutant promoter were treated with TMZ or DMSO control for 48 hours after which promoter activity was measured using dual luciferase assay. * p<0.05 in the two-tailed t-test; NS, not significant.