Literature DB >> 34108663

ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation.

Yana van der Weegen1, Klaas de Lint2, Diana van den Heuvel1, Yuka Nakazawa3,4, Tycho E T Mevissen5, Janne J M van Schie2, Marta San Martin Alonso1,6, Daphne E C Boer1, Román González-Prieto7, Ishwarya V Narayanan8, Noud H M Klaassen1, Annelotte P Wondergem1, Khashayar Roohollahi2, Josephine C Dorsman2, Yuichiro Hara3,4, Alfred C O Vertegaal7, Job de Lange2, Johannes C Walter5, Sylvie M Noordermeer1,6, Mats Ljungman8,9, Tomoo Ogi3,4, Rob M F Wolthuis10, Martijn S Luijsterburg11.   

Abstract

Cells employ transcription-coupled repair (TCR) to eliminate transcription-blocking DNA lesions. DNA damage-induced binding of the TCR-specific repair factor CSB to RNA polymerase II (RNAPII) triggers RNAPII ubiquitylation of a single lysine (K1268) by the CRL4CSA ubiquitin ligase. How CRL4CSA is specifically directed towards K1268 is unknown. Here, we identify ELOF1 as the missing link that facilitates RNAPII ubiquitylation, a key signal for the assembly of downstream repair factors. This function requires its constitutive interaction with RNAPII close to K1268, revealing ELOF1 as a specificity factor that binds and positions CRL4CSA for optimal RNAPII ubiquitylation. Drug-genetic interaction screening also revealed a CSB-independent pathway in which ELOF1 prevents R-loops in active genes and protects cells against DNA replication stress. Our study offers key insights into the molecular mechanisms of TCR and provides a genetic framework of the interplay between transcriptional stress responses and DNA replication.

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Year:  2021        PMID: 34108663      PMCID: PMC8890769          DOI: 10.1038/s41556-021-00688-9

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.213


  48 in total

1.  Tandem protein interaction modules organize the ubiquitin-dependent response to DNA double-strand breaks.

Authors:  Stephanie Panier; Yosuke Ichijima; Amélie Fradet-Turcotte; Charles C Y Leung; Lilia Kaustov; Cheryl H Arrowsmith; Daniel Durocher
Journal:  Mol Cell       Date:  2012-06-27       Impact factor: 17.970

2.  Ubiquitination of DNA Damage-Stalled RNAPII Promotes Transcription-Coupled Repair.

Authors:  Yuka Nakazawa; Yuichiro Hara; Yasuyoshi Oka; Okiru Komine; Diana van den Heuvel; Chaowan Guo; Yasukazu Daigaku; Mayu Isono; Yuxi He; Mayuko Shimada; Kana Kato; Nan Jia; Satoru Hashimoto; Yuko Kotani; Yuka Miyoshi; Miyako Tanaka; Akira Sobue; Norisato Mitsutake; Takayoshi Suganami; Akio Masuda; Kinji Ohno; Shinichiro Nakada; Tomoji Mashimo; Koji Yamanaka; Martijn S Luijsterburg; Tomoo Ogi
Journal:  Cell       Date:  2020-03-05       Impact factor: 41.582

3.  WAPL-Dependent Repair of Damaged DNA Replication Forks Underlies Oncogene-Induced Loss of Sister Chromatid Cohesion.

Authors:  Bente Benedict; Janne J M van Schie; Anneke B Oostra; Jesper A Balk; Rob M F Wolthuis; Hein Te Riele; Job de Lange
Journal:  Dev Cell       Date:  2020-02-20       Impact factor: 12.270

4.  Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation.

Authors:  John G Doench; Ella Hartenian; Daniel B Graham; Zuzana Tothova; Mudra Hegde; Ian Smith; Meagan Sullender; Benjamin L Ebert; Ramnik J Xavier; David E Root
Journal:  Nat Biotechnol       Date:  2014-09-03       Impact factor: 54.908

5.  Up-regulation of human prostaglandin reductase 1 improves the efficacy of hydroxymethylacylfulvene, an antitumor chemotherapeutic agent.

Authors:  Xiang Yu; Melanie M Erzinger; Kathryn E Pietsch; Frances N Cervoni-Curet; John Whang; John Niederhuber; Shana J Sturla
Journal:  J Pharmacol Exp Ther       Date:  2012-08-15       Impact factor: 4.030

6.  High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.

Authors:  Lionel A Sanz; Frédéric Chédin
Journal:  Nat Protoc       Date:  2019-05-03       Impact factor: 13.491

7.  Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells.

Authors:  Charles G Danko; Nasun Hah; Xin Luo; André L Martins; Leighton Core; John T Lis; Adam Siepel; W Lee Kraus
Journal:  Mol Cell       Date:  2013-03-21       Impact factor: 17.970

8.  Mutations in UVSSA cause UV-sensitive syndrome and impair RNA polymerase IIo processing in transcription-coupled nucleotide-excision repair.

Authors:  Yuka Nakazawa; Kensaku Sasaki; Norisato Mitsutake; Michiko Matsuse; Mayuko Shimada; Tiziana Nardo; Yoshito Takahashi; Kaname Ohyama; Kosei Ito; Hiroyuki Mishima; Masayo Nomura; Akira Kinoshita; Shinji Ono; Katsuya Takenaka; Ritsuko Masuyama; Takashi Kudo; Hanoch Slor; Atsushi Utani; Satoshi Tateishi; Shunichi Yamashita; Miria Stefanini; Alan R Lehmann; Koh-ichiro Yoshiura; Tomoo Ogi
Journal:  Nat Genet       Date:  2012-05       Impact factor: 38.330

9.  Multiomic Analysis of the UV-Induced DNA Damage Response.

Authors:  Stefan Boeing; Laura Williamson; Vesela Encheva; Ilaria Gori; Rebecca E Saunders; Rachael Instrell; Ozan Aygün; Marta Rodriguez-Martinez; Juston C Weems; Gavin P Kelly; Joan W Conaway; Ronald C Conaway; Aengus Stewart; Michael Howell; Ambrosius P Snijders; Jesper Q Svejstrup
Journal:  Cell Rep       Date:  2016-05-12       Impact factor: 9.423

10.  Regulation of the RNAPII Pool Is Integral to the DNA Damage Response.

Authors:  Ana Tufegdžić Vidaković; Richard Mitter; Gavin P Kelly; Michelle Neumann; Michelle Harreman; Marta Rodríguez-Martínez; Anna Herlihy; Juston C Weems; Stefan Boeing; Vesela Encheva; Liam Gaul; Laura Milligan; David Tollervey; Ronald C Conaway; Joan W Conaway; Ambrosius P Snijders; Aengus Stewart; Jesper Q Svejstrup
Journal:  Cell       Date:  2020-03-05       Impact factor: 66.850

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  7 in total

1.  The CIP2A-TOPBP1 axis safeguards chromosome stability and is a synthetic lethal target for BRCA-mutated cancer.

Authors:  Salomé Adam; Silvia Emma Rossi; Nathalie Moatti; Mara De Marco Zompit; Yibo Xue; Timothy F Ng; Alejandro Álvarez-Quilón; Jessica Desjardins; Vivek Bhaskaran; Giovanni Martino; Dheva Setiaputra; Sylvie M Noordermeer; Toshiro K Ohsumi; Nicole Hustedt; Rachel K Szilard; Natasha Chaudhary; Meagan Munro; Artur Veloso; Henrique Melo; Shou Yun Yin; Robert Papp; Jordan T F Young; Michael Zinda; Manuel Stucki; Daniel Durocher
Journal:  Nat Cancer       Date:  2021-11-11

2.  BIRC2-BIRC3 amplification: a potentially druggable feature of a subset of head and neck cancers in patients with Fanconi anemia.

Authors:  Khashayar Roohollahi; Yvonne de Jong; Govind Pai; Mohamad Amr Zaini; Klaas de Lint; Daoud Sie; Martin A Rooimans; Davy Rockx; Elizabeth E Hoskins; Najim Ameziane; Rob Wolthuis; Hans Joenje; Susanne I Wells; Josephine Dorsman
Journal:  Sci Rep       Date:  2022-01-07       Impact factor: 4.379

Review 3.  XPG: a multitasking genome caretaker.

Authors:  Alba Muniesa-Vargas; Arjan F Theil; Cristina Ribeiro-Silva; Wim Vermeulen; Hannes Lans
Journal:  Cell Mol Life Sci       Date:  2022-03-01       Impact factor: 9.207

Review 4.  Genomic Instability and Cancer Risk Associated with Erroneous DNA Repair.

Authors:  Ken-Ichi Yoshioka; Rika Kusumoto-Matsuo; Yusuke Matsuno; Masamichi Ishiai
Journal:  Int J Mol Sci       Date:  2021-11-12       Impact factor: 5.923

Review 5.  Epigenetic Regulation of Nucleotide Excision Repair.

Authors:  Wentao Li; Kyle Jones; Tyler J Burke; Md Akram Hossain; Leah Lariscy
Journal:  Front Cell Dev Biol       Date:  2022-04-08

6.  MAD2L2 promotes replication fork protection and recovery in a shieldin-independent and REV3L-dependent manner.

Authors:  Inés Paniagua; Zainab Tayeh; Mattia Falcone; Santiago Hernández Pérez; Aurora Cerutti; Jacqueline J L Jacobs
Journal:  Nat Commun       Date:  2022-09-08       Impact factor: 17.694

Review 7.  Tools for Decoding Ubiquitin Signaling in DNA Repair.

Authors:  Benjamin Foster; Martin Attwood; Ian Gibbs-Seymour
Journal:  Front Cell Dev Biol       Date:  2021-12-07
  7 in total

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