Literature DB >> 34106871

DINs: Deep Interactive Networks for Neurofibroma Segmentation in Neurofibromatosis Type 1 on Whole-Body MRI.

Jian-Wei Zhang, Wei Chen, K Ina Ly, Xubin Zhang, Fan Yan, Justin Jordan, Gordon Harris, Scott Plotkin, Pengyi Hao, Wenli Cai.   

Abstract

Neurofibromatosis type 1 (NF1) is an autosomal dominant tumor predisposition syndrome that involves the central and peripheral nervous systems. Accurate detection and segmentation of neurofibromas are essential for assessing tumor burden and longitudinal tumor size changes. Automatic convolutional neural networks (CNNs) are sensitive and vulnerable as tumors' variable anatomical location and heterogeneous appearance on MRI. In this study, wepropose deep interactive networks (DINs) to address the above limitations. User interactions guide the model to recognize complicated tumors and quickly adapt to heterogeneous tumors. We introduce a simple but effective Exponential Distance Transform (ExpDT) that converts user interactions into guide maps regarded as the spatial and appearance prior. Comparing with popular Euclidean and geodesic distances, ExpDT is more robust to various image sizes, which reserves the distribution of interactive inputs. Furthermore, to enhance the tumor-related features, we design a deep interactive module to propagate the guides into deeper layers. We train and evaluate DINs on three MRI data sets from NF1 patients. The experiment results yield significant improvements of 44% and 14% in DSC comparing with automated and other interactive methods, respectively. We also experimentally demonstrate the efficiency of DINs in reducing user burden when comparing with conventional interactive methods.

Entities:  

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Year:  2022        PMID: 34106871      PMCID: PMC8855964          DOI: 10.1109/JBHI.2021.3087735

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   5.772


  14 in total

1.  Automated detection and volume measurement of plexiform neurofibromas in neurofibromatosis 1 using magnetic resonance imaging.

Authors:  Jeffrey Solomon; Katherine Warren; Eva Dombi; Nicholas Patronas; Brigitte Widemann
Journal:  Comput Med Imaging Graph       Date:  2004-07       Impact factor: 4.790

2.  Random walks for image segmentation.

Authors:  Leo Grady
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-11       Impact factor: 6.226

3.  User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.

Authors:  Paul A Yushkevich; Joseph Piven; Heather Cody Hazlett; Rachel Gimpel Smith; Sean Ho; James C Gee; Guido Gerig
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

4.  DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs.

Authors:  Liang-Chieh Chen; George Papandreou; Iasonas Kokkinos; Kevin Murphy; Alan L Yuille
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2017-04-27       Impact factor: 6.226

5.  Multiple Resolution Residually Connected Feature Streams for Automatic Lung Tumor Segmentation From CT Images.

Authors:  Jue Jiang; Yu-Chi Hu; Chia-Ju Liu; Darragh Halpenny; Matthew D Hellmann; Joseph O Deasy; Gig Mageras; Harini Veeraraghavan
Journal:  IEEE Trans Med Imaging       Date:  2018-07-23       Impact factor: 10.048

6.  DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation.

Authors:  Guotai Wang; Maria A Zuluaga; Wenqi Li; Rosalind Pratt; Premal A Patel; Michael Aertsen; Tom Doel; Anna L David; Jan Deprest; Sebastien Ourselin; Tom Vercauteren
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-06-01       Impact factor: 6.226

7.  H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation From CT Volumes.

Authors:  Xiaomeng Li; Hao Chen; Xiaojuan Qi; Qi Dou; Chi-Wing Fu; Pheng-Ann Heng
Journal:  IEEE Trans Med Imaging       Date:  2018-06-11       Impact factor: 10.048

8.  Brain tumor segmentation with Deep Neural Networks.

Authors:  Mohammad Havaei; Axel Davy; David Warde-Farley; Antoine Biard; Aaron Courville; Yoshua Bengio; Chris Pal; Pierre-Marc Jodoin; Hugo Larochelle
Journal:  Med Image Anal       Date:  2016-05-19       Impact factor: 8.545

9.  Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning.

Authors:  Guotai Wang; Wenqi Li; Maria A Zuluaga; Rosalind Pratt; Premal A Patel; Michael Aertsen; Tom Doel; Anna L David; Jan Deprest; Sebastien Ourselin; Tom Vercauteren
Journal:  IEEE Trans Med Imaging       Date:  2018-07       Impact factor: 10.048

10.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

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  1 in total

1.  Integrative pan-cancer analysis of MEK1 aberrations and the potential clinical implications.

Authors:  Zhiyang Zhou; Bi Peng; Juanni Li; Kewa Gao; Yuan Cai; Zhijie Xu; Yuanliang Yan
Journal:  Sci Rep       Date:  2021-09-15       Impact factor: 4.379

  1 in total

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