Literature DB >> 34105970

Investigation of the Recovery Stroke and ATP Hydrolysis and Changes Caused Due to the Cardiomyopathic Point Mutations in Human Cardiac β Myosin.

Ananya Chakraborti1, Anthony P Baldo1, Jil C Tardiff2, Steven D Schwartz1.   

Abstract

Human cardiac β myosin undergoes the cross-bridge cycle as part of the force-generating mechanism of cardiac muscle. The recovery stroke is considered one of the key steps of the kinetic cycle as it is the conformational rearrangement required to position the active site residues for hydrolysis of ATP and interaction with actin. We explored the free-energy surface of the transition and investigated the effect of the genetic cardiomyopathy causing mutations R453C, I457T, and I467T on this step using metadynamics. This work extends previous studies on Dictyostelium myosin II with engineered mutations. Here, like previously, we generated an unbiased thermodynamic ensemble of reactive trajectories for the chemical step using transition path sampling. Our methodologies were able to predict the changes to the dynamics of the recovery stroke as well as predict the pathway of breakdown of ATP to ADP and HPO42- with the stabilization of the metaphosphate intermediate. We also observed clear differences between the Dictyostelium myosin II and human cardiac β myosin for ATP hydrolysis as well as predict the effect of the mutation I467T on the chemical step.

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Year:  2021        PMID: 34105970      PMCID: PMC8281501          DOI: 10.1021/acs.jpcb.1c03144

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   3.466


  35 in total

1.  SWISS-MODEL: An automated protein homology-modeling server.

Authors:  Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C Peitsch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

3.  Selective perturbation of the myosin recovery stroke by point mutations at the base of the lever arm affects ATP hydrolysis and phosphate release.

Authors:  András Málnási-Csizmadia; Judit Tóth; David S Pearson; Csaba Hetényi; László Nyitray; Michael A Geeves; Clive R Bagshaw; Mihály Kovács
Journal:  J Biol Chem       Date:  2007-04-21       Impact factor: 5.157

4.  The structural coupling between ATPase activation and recovery stroke in the myosin II motor.

Authors:  Sampath Koppole; Jeremy C Smith; Stefan Fischer
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

Review 5.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

6.  Mechanism of adenosine triphosphate hydrolysis by actomyosin.

Authors:  R W Lymn; E W Taylor
Journal:  Biochemistry       Date:  1971-12-07       Impact factor: 3.162

Review 7.  Motor Proteins.

Authors:  H Lee Sweeney; Erika L F Holzbaur
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-05-01       Impact factor: 10.005

8.  Mechanochemical Function of Myosin II: Investigation into the Recovery Stroke and ATP Hydrolysis.

Authors:  Anthony P Baldo; Jil C Tardiff; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2020-11-02       Impact factor: 2.991

Review 9.  How Myosin Generates Force on Actin Filaments.

Authors:  Anne Houdusse; H Lee Sweeney
Journal:  Trends Biochem Sci       Date:  2016-10-04       Impact factor: 13.807

Review 10.  Motor proteins and molecular motors: how to operate machines at the nanoscale.

Authors:  Anatoly B Kolomeisky
Journal:  J Phys Condens Matter       Date:  2013-10-07       Impact factor: 2.333

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  2 in total

1.  Free-Energy Surfaces of Two Cardiac Thin Filament Conformational Changes during Muscle Contraction.

Authors:  Allison B Mason; Jil C Tardiff; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2022-05-18       Impact factor: 3.466

2.  Computational and biophysical determination of pathogenicity of variants of unknown significance in cardiac thin filament.

Authors:  Allison B Mason; Melissa L Lynn; Anthony P Baldo; Andrea E Deranek; Jil C Tardiff; Steven D Schwartz
Journal:  JCI Insight       Date:  2021-12-08
  2 in total

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