Literature DB >> 34104963

Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.

Andrew Thompson1,2,3, Katharine King1,2,4, Andrew P Morris5,6, Munir Pirmohamed1,2,3,7,8.   

Abstract

The relationship between the genetic loci that influence mean corpuscular volume (MCV) and those associated with excess alcohol drinking is unknown. We used white British participants from the UK Biobank (n = 362 595) to assess the association between alcohol consumption and MCV, and whether this was modulated by genetic factors. Multivariable regression was applied to identify predictors of MCV. GWAS, with and without stratification for alcohol consumption, determined how genetic variants influence MCV. SNPs in ADH1B, ADH1C and ALDH1B were used to construct a genetic score to test the assumption that acetaldehyde formation is an important determinant of MCV. Additional investigations using Mendelian randomization and phenome-wide association analysis were conducted. Increasing alcohol consumption by 40 g/week resulted in a 0.30% [95% confidence interval CI: 0.30-0.31%] increase in MCV (P < 1.0 × 10-320). Unstratified (irrespective of alcohol intake) GWAS identified 212 loci associated with MCV, of which 108 were novel. There was no heterogeneity of allelic effects by drinking status. No association was found between MCV and the genetic score generated from alcohol metabolizing genes. Mendelian randomization demonstrated a causal effect for alcohol on MCV. Seventy-one SNP-outcome pairs reached statistical significance in phenome-wide association analysis, with evidence of shared genetic architecture for MCV and thyroid dysfunction, and mineral metabolism disorders. MCV increases linearly with alcohol intake in a causal manner. Many genetic loci influence MCV, with new loci identified in this analysis that provide novel biological insights. However, there was no interaction between alcohol consumption and the allelic variants associated with MCV.
© The Author(s) 2021. Published by Oxford University Press.

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Mesh:

Year:  2021        PMID: 34104963      PMCID: PMC8522631          DOI: 10.1093/hmg/ddab147

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


Introduction

Alcohol misuse and abuse is a leading cause of morbidity and mortality (1). In 2016, global statistics suggested that 5.1% (~3 million) of deaths and 5.3% (~133 million) of disability-adjusted life years were caused by the harmful use of alcohol (2). Early identification of individuals who are misusing alcohol is critical for interventions to stop progression towards alcohol dependence and alcohol-related end-organ damage. Unfortunately, a history from a patient is not always reliable, and laboratory tests vary in their diagnostic accuracy, availability and usage. In clinical practice, therefore, it is usual to use a combination of history (including alcohol intake and symptoms consistent with organ damage), physical examination (to look for features of organ damage) and laboratory markers that support alcohol misuse as the underlying aetiology. The most widely used laboratory tests are (a) liver function tests (in particular, gamma-glutamyl transferase), which indicates liver damage, and (b) the mean corpuscular volume (MCV), a measure of the mean size and volume of erythrocytes, which is a non-specific marker of alcohol misuse (3). The molecular basis for the increase in MCV that occurs with alcohol misuse is incompletely understood. A study of 105 alcohol-dependent individuals, 62 moderate drinkers and 24 abstainers was able to show that the increase in MCV was dose-dependent (4). Alcohol may have direct haematotoxic effects by interfering with cell structure and erythrocyte stability (5). Interestingly, the levels of acetaldehyde, a metabolite of alcohol, show a significant increase inside erythrocytes of alcohol-dependent individuals (6). Since acetaldehyde is a toxic metabolite, and can bind to proteins, this may lead to erythrocyte damage directly or through an immune-mediated mechanism via the development of anti-acetaldehyde adduct antibodies (4). Folate deficiency also occurs with alcohol misuse, particularly in those patients with liver disease (7), and therefore may be implicated in increasing the MCV (8). It is important to note, however, that MCV is a non-specific biomarker in that other factors such as age, smoking, malnutrition and underlying diseases, including hypothyroidism, liver disease and pernicious anaemia, are also known to affect MCV (7,9,10). There is also a genetic contribution to the MCV, in addition to the genetic factors that have been identified for other haematological indices (11,12). Genetic factors have also been implicated in high alcohol consumption—our recent study showed genome-wide significant effects across six loci following meta-analysis in two large independent cohorts (13). The relationship between the genetic loci that determine the MCV and those associated with excess alcohol drinking is, however, unknown. In this study, we have used genome-wide association study (GWAS) data from the UK Biobank (UKB) to understand if genetic variants and level of alcohol consumption interact to influence MCV. The specific aims were as follows: (1) determine how genetic loci influence MCV, with and without stratification for alcohol consumption; (2) confirm the causal effect of alcohol consumption on MCV using Mendelian randomization and (3) explore the association between acetaldehyde accumulation and MCV using genotype data from alcohol metabolizing genes.

Results

Demographics

A total of 139 921 individuals were excluded from the UKB cohort: 1502 declined to provide information on their drinking status, 1984 were drinking at levels at least 4 SDs above sex-specific means, 7060 had liver disease, 23 385 had missing MCV data, 104 788 failed GWAS quality control (including ethnic inclusion) and 1202 had missing covariate information. This study therefore included 362 595 participants, of whom 194 706 (53.7%) were females and the average age was 56.9 (SD = 7.9) years. There were 82 235 (24.6%) zero, 146 436 (40.1%) light, 114 946 (30.2%) moderate and 18 978 (5.0%) heavy drinkers, with the median units/week being 6.0 [interquartile (IQR) = 13.0] in females and 15.6 (IQR = 23.9) in males. There was evidence of hypothyroidism and vitamin B12 deficiency in 14 781 and 777 participants, respectively.

Alcohol consumption and MCV

Alcohol consumption was associated with higher MCV (P < 1.0 × 10−320). Increasing alcohol consumption by 5 units (40 g) per week resulted in a 0.3% increase in MCV. Variation by drinking status was evident; compared with light drinkers (reference group), zero drinkers had 0.9% lower mean values, while moderate and heavy drinkers had 1.1 and 2.8% higher mean values, respectively (all P < 1.0 × 10−320; Table 1). Results from multivariate analysis for MCV were consistent in terms of direction and magnitude when those classified as teetotal were removed (Supplementary Material Table S1).
Table 1

Summary of linear and logistic regression models with all participants (n = 362 595)

Risk factorChange in MCV (%)95% CI P
Alcohol: continuous variable
Alcohol (5 units)0.300.30 to 0.31<1.0 × 10−320
Sex (Ref: female)−0.21−0.25 to −0.185.2 × 10−38
Age at recruitment0.060.06 to 0.06<1.0 × 10−320
Never smoker (Ref: current)−2.00−2.05 to −1.95<1.0 × 10−320
Previous smoker (Ref: current)−1.87−1.93 to −1.82<1.0 × 10−320
Hypothyroidism−0.20−0.28 to −0.132.4 × 10−7
B12 deficiency0.20−0.13 to 0.530.23
Alcohol: categorical variable
Drinking status (Ref: light) Non-drinker Moderate Heavy−0.891.142.80−0.93 to −0.851.10 to 1.172.72 to 2.87< 1.0 × 10−320<1.0 × 10−320<1.0 × 10−320
Sex (Ref: female)−0.08−0.11 to −0.051.9 × 10−6
Age at recruitment0.060.06 to 0.07<1.0 × 10−320
Never smoker (Ref: current)−2.11−2.16 to −2.06<1.0 × 10−320
Previous smoker (Ref: current)−1.97−2.02 to −1.92<1.0 × 10−320
Hypothyroidism−0.17−0.25 to −0.091.4 × 10−5
B12 deficiency0.26−0.06 to 0.590.12
Summary of linear and logistic regression models with all participants (n = 362 595)

GWAS of MCV

An unstratified (i.e. irrespective of alcohol intake) GWAS in white British individuals identified 212 loci associated with MCV at P < 5 × 10−8 (Fig. 1). Presented P-values are corrected based on a LD score regression intercept = 1.20. The large sample size (n = 362 595) resulted in identification of variants with small effect sizes, equivalent to a change in MCV of 0.057% (Table 2). There was evidence to suggest that lower minor allele frequency was associated with larger effect sizes (Fig. 2). The largest effect size was observed with rs144861591 [effect allele frequency (EAF) 0.076; P = 3.4 × 10−640], where the minor allele (T) was associated with an increase in MCV by 1.11%. This variant is located ~13.5 bp downstream of LOC108783645, an HFE antisense RNA. HFE itself is involved with iron regulation and has been associated with haemochromatosis (14). Strong associations were also reported in loci mapping to HBS1L-MYB, TMPRSS6, CCND3, CARMIL1, ODF3B and CCDC162P (11,12,15–18). We compared (using SNP ID and reported gene symbol) our findings to those of other equivalently sized genome-wide studies of MCV in UKB (11,19) and found that 58.0% (n = 123) of our loci were unique, likely due to targeted study of MCV and trait-specific covariate control whereas the cited studies explored multiple traits. Investigation in the GWAS catalog (https://www.ebi.ac.uk/gwas/) found replication with a further 15 mapped genes, leaving 108 new findings (Table 2). The SNP-based heritability of MCV was estimated to be 24.2% through LD score regression.
Figure 2

Relationship between minor allele frequency and effect size.

Table 2

Summary of genome-wide significant SNPs following distance-based clumping

SNPCHRBPLocus (overlapping/nearest)Effect alleleEAF% change MCV95%LCI%UCI P (GC corrected)Uniquea
rs77756986135 418 635HBS1LC0.738--0.73--0.76--0.712.8e−790N
rs144861591626 072 992HFEC0.924--1.10--1.14--1.063.4e−640N
rs8557912237 462 936TMPRSS6A0.440--0.59--0.61--0.563.0e−610N
rs9471708641 956 353CCND3C0.7280.580.560.601.3e−493N
rs5924236139 840 693RP11-12A2.3A0.4470.420.400.442.2e−327N
rs149359690625 526 319LRRC16AC0.900--0.69--0.72--0.653.6e−325N
rs218264455 408 875AC006552.1A0.752--0.46--0.49--0.448.7E−287Y
rs13191659627 001 055VN1R12PC0.911--0.66--0.70--0.631.7E−264Y
rs1405222250 971 266ODF3BT0.327--0.37--0.39--0.351.4E−221N
rs94870236109 590 004C6orf183A0.551--0.34--0.36--0.313.6E−212N
rs71559031627 519 947XXbac-BPG34I8.3G0.916--0.62--0.66--0.582.7E−203Y
rs11774706916170 076NPRL3G0.9631.030.961.109.1E−188N
rs1075865794 853 751RCL1A0.7910.390.370.421.8E−182N
rs60149932055 991 637RBM38A0.513--0.32--0.34--0.301.2E−180N
rs147493146628 054 465ZNF165C0.913--0.56--0.60--0.525.2E−179Y
rs98010177100 236 202TFR2G0.376--0.31--0.34--0.295.7E−168N
rs74284963142 320 532PLS1A0.4140.300.280.337.4E−164N
rs6592965750 427 982IKZF1G0.546--0.30--0.32--0.281.3E−158N
rs81107871912 999 458KLF1C0.609--0.29--0.31--0.273.2E−149N
rs114179634628 626 101LINC00533C0.911--0.51--0.55--0.472.3E−146Y
rs13194984626 500 563BTN1A1G0.856--0.38--0.41--0.351.7E−134N
rs412980873195 779 736TFRCC0.6870.290.270.324.0E−134N
rs10452672112 187 041NAA0.2660.320.290.352.8E−122N
rs99524691843 812 010C18orf25T0.2540.300.270.329.1E−121N
rs362538629 510 630GPR53PG0.902--0.40--0.44--0.362.4E−109Y
rs113700287324 334 511THRBT0.326--0.26--0.28--0.241.1E−107N
rs787441871933 754 548CTD-2540B15.12C0.9180.440.400.487.7E−107N
rs1139687851565 734 015DPP8A0.7480.280.250.304.3E−101Y
rs243076260 617 563AC007381.2G0.594--0.23--0.25--0.211.9E−94Y
rs174763641071 094 504HK1T0.890--0.36--0.39--0.321.5E−92N
rs2057726630 335 350UBQLN1P1C0.1430.310.280.341.5E−91Y
rs5627304912121 156 041UNC119BA0.6120.230.210.254.3E−90N
rs70890631045 946 389RP11-67C2.2C0.761--0.26--0.28--0.238.0E−88Y
rs7382642232 874 258FBXO7G0.7280.240.220.271.7E−85N
rs536350318124 331 068CCND2-AS1C0.788--0.26--0.28--0.231.1E−81N
rs38114441248 039 451TRIM58C0.6670.220.200.241.1E−81N
rs20264281045 389 452TMEM72-AS1T0.416--0.21--0.23--0.193.3E−75N
rs168433461198 543 027RP11-553K8.2C0.972--0.57--0.64--0.511.7E−66Y
rs1042391616 290 761GMPRT0.6190.190.170.219.5E−66N
rs561427081719 934 963SPECC1A0.478--0.19--0.21--0.172.8E−65N
rs12193223624 978 511FAM65BC0.938--0.37--0.42--0.331.3E−62Y
rs17296501821 849 566XPO7C0.838--0.24--0.27--0.218.1E−59N
rs770552651 285 974TERTC0.6740.190.170.211.6E−57N
rs109012529136 128 000ABOG0.9400.360.320.412.5E−55N
rs74401481191 855 583KLF16C0.9750.660.570.743.5E−55N
rs132071506110 092 900FIG4C0.313--0.18--0.20--0.151.2E−52N
rs4134058147 670 911TAL1T0.457--0.17--0.19--0.155.4E−52N
rs28342562135 125 373AP000304.12A0.6550.180.150.201.4E−51N
rs3815006164 478 388RP1-155D22.2C0.5490.160.140.182.5E−50N
rs11721131205 226 288TMCC2T0.587--0.16--0.19--0.143.0E−49N
rs121281711158 580 477SPTA1A0.7190.180.150.203.3E−48N
rs673055828 756 183AC011747.6C0.6200.160.140.189.6E−46N
rs1119182345154 027 482MIR1303GT0.860--0.23--0.26--0.193.1E−45N
rs5585679781776 124 810TMC6A0.7770.190.160.216.8E−44N
rs677755444122 796 917RP11-63B13.1G0.603--0.16--0.18--0.138.4E−44Y
rs175342021203 281 175BTG2G0.4640.150.130.175.9E−42N
rs111721712631 315 407HLA-BC0.5340.150.130.178.5E−42N
rs107665331119 224 677CSRP3T0.2780.160.140.191.7E−40N
rs112277931167 194 593RPS6KB2C0.5610.150.120.173.4E−39Y
rs679715391687 886 726SLC7A5T0.764--0.17--0.19--0.148.6E−39N
rs4134898799 711 614TAF6C0.8680.210.180.241.7E−37Y
rs177765471051 581 143NCOA4A0.965--0.38--0.44--0.324.3E−36N
rs1567668823 418 122SLC25A37A0.429--0.14--0.16--0.121.6E−35N
rs1448946889100 746 855ANP32BG0.7800.160.130.191.6E−33N
rs359798281254 685 880RP11-968A15.8C0.931--0.26--0.30--0.221.8E−32N
rs1141658921474 223 968ELMSAN1C0.976--0.43--0.50--0.366.1E−32Y
rs7789162744 872 900H2AFVT0.495--0.13--0.15--0.111.5E−31N
rs1459468442111 612 050ACOXLT0.662--0.13--0.16--0.117.1E−31N
rs590275218128 966 573PVT1A0.6570.130.110.162.4E−30N
rs64400063141 142 691ZBTB38G0.5520.130.110.153.0E−30Y
rs6788010316 929 109PLCL2T0.9200.230.190.279.1E−30N
rs4963211194 886 632RP11-712B9.2T0.3860.130.100.151.3E−28N
rs19918668130 624 105CCDC26G0.4240.120.100.151.7E−28N
rs592229631 930 441SKIV2LG0.4860.120.100.141.9E−28Y
rs1088335910101 274 033RP11-129J12.2A0.716--0.13--0.16--0.115.0E−27Y
rs109233971118 251 143RP11-134N8.2C0.837--0.16--0.19--0.131.1E−26N
rs781471991566 245 962MEGF11G0.9550.290.230.341.2E−26Y
rs125821701253 757 831SP1A0.156--0.16--0.19--0.131.4E−26N
rs27139361556 545 985TEX9A0.5770.120.100.143.8E−26N
rs117233714145 025 810RP11-673E1.4T0.527--0.12--0.14--0.104.3E−26N
rs1513057162052 222 106ZNF217C0.984--0.48--0.57--0.394.9E−26N
rs1118363601689 786 649VPS9D1A0.594--0.12--0.14--0.094.7E−25N
rs22773391257 146 069PRIM1T0.897--0.19--0.22--0.156.6E−25N
rs490053814102 994 065MIR4309T0.355--0.12--0.14--0.109.0E−25N
rs1134634415 603 069CC2D2AG0.414--0.11--0.14--0.091.9E−24N
rs1362112236 758 547MYH9A0.3130.120.100.143.9E−24N
rs37118287211108 300 854C11orf65CT0.5880.110.090.147.7E−24N
rs3229181199 068 614RP11-16L9.4A0.5390.110.090.138.0E−23N
rs156941912 996 602PRDM16T0.2330.130.100.154.2E−22N
rs95325631341 160 270FOXO1T0.7820.130.100.164.8E−22N
rs200234036139 869 512MACF1GC0.7280.120.100.157.1E−22Y
rs8757425173 287 763CPEB4G0.5940.110.090.137.3E−22N
rs9370792615 099 585RP1-190J20.2A0.601--0.11--0.13--0.081.1E−21Y
rs138191091799 105 676ZKSCAN5A0.8770.170.130.201.3E−21Y
rs4955426349 143 438QARSC0.2220.120.100.154.2E−21Y
rs21435831114 989 211TRIM33T0.747--0.12--0.14--0.094.2E−21N
rs1088371010103 885 557LDB1T0.545--0.10--0.13--0.085.9E−21Y
rs74873141288 836 215Y_RNAG0.299--0.11--0.14--0.096.0E−21N
rs353620071496 003 198GLRX5G0.749--0.12--0.15--0.107.8E−21N
rs632959168 197 671GNG12A0.295--0.11--0.14--0.099.2E−21N
rs10478912211 540 507CPS1C0.684--0.11--0.13--0.091.1E−20N
rs2923403842 447 748RP11-503E24.3G0.4070.100.080.132.2E−20Y
rs22245392038 552 107HSPE1P1A0.584--0.10--0.13--0.083.5E−20N
rs1494723431064 905 218NRBF2C0.9670.280.220.341.3E−19N
rs2237572792 260 260CDK6T0.804--0.12--0.15--0.102.9E−19N
rs545709142111 881 141CLCN6C0.8370.130.100.163.3E−19N
rs1277926310104 886 533NT5C2G0.7060.110.080.133.6E−19Y
rs3223515172 194 873RP11-779O18.3C0.532--0.10--0.12--0.084.5E−19Y
rs727666389136 931 778BRD3C0.836--0.13--0.16--0.106.1E−19Y
rs1745671161 593 005FADS2A0.6490.100.080.128.3E−19Y
rs46631992236 368 039AGAP1T0.601--0.10--0.12--0.081.7E−18N
rs749291471918 413 061LSM4G0.9410.210.160.262.2E−18N
rs20158117010105 682 344OBFC1T0.8450.130.100.163.2E−18Y
rs9866749349 650 935BSNA0.2960.110.080.134.7E−18Y
rs2492301137 939 173LINC01137T0.4710.100.070.126.0E−18N
rs80226431848 267 917SPIDRA0.9050.160.120.202.0E−17Y
rs362251534146 081 852OTUD4C0.8860.150.110.182.8E−17Y
rs76417613178 740 422ZMAT3T0.302--0.10--0.12--0.083.1E−17N
rs6116019203 742 066C20orf27T0.901--0.16--0.19--0.123.7E−17N
rs493629111114 009 982ZBTB16A0.6110.100.070.124.0E−17Y
rs6531706439 296 167RFC1T0.565--0.09--0.12--0.075.8E−17N
rs730794761221 343 833SLCO1B1A0.8500.130.100.166.1E−17Y
rs799532863132 226 100DNAJC13A0.9420.200.150.248.3E−17Y
rs18671461575 354 971PPCDCC0.8180.120.090.159.0E−17Y
rs2723513717 814 888SNX13A0.461--0.09--0.11--0.071.2E−16Y
rs1119279847 071 977AC113134.1C0.9030.150.120.191.9E−16Y
rs1454987614128 456 129RP11-18O11.2T0.9910.490.370.613.7E−16Y
rs9201122174 219 135AC092573.2G0.947--0.20--0.25--0.154.7E−16N
rs2134814690 987 512BACH2C0.646--0.09--0.11--0.075.4E−16N
rs121960496121 786 091RNU4-35PA0.8010.110.080.146.7E−16Y
rs96418411116 648 917ZNF259G0.132--0.13--0.16--0.106.7E−16Y
rs132097866131 421 040AKAP7A0.7690.100.080.138.0E−16Y
rs1451850451760 091 881MED13T0.7700.110.080.131.4E−15Y
rs3892355195 696 962LONP1G0.674--0.09--0.12--0.071.9E−15Y
rs6195207112133 076 439FBRSL1C0.687--0.09--0.12--0.072.0E−15Y
rs6711700286 987 987RMND5AG0.329--0.09--0.12--0.072.2E−15N
rs1477079269115 914 583SLC31A2C0.9810.340.250.422.6E−15Y
rs4672497262 523 565snoU13C0.7790.100.080.135.0E−15N
rs657036635 901 151SLC26A8G0.7030.090.070.125.0E−15Y
rs7137095126 739 907LPAR5C0.452--0.09--0.11--0.078.3E−15Y
rs1330826985 129 970RP11-15B24.5G0.772--0.10--0.13--0.081.2E−14N
rs1390124502160 684 717LY75T0.504--0.09--0.11--0.061.3E−14Y
rs754971263141 655 542RP11-271K21.11A0.9930.520.390.662.8E−14Y
rs2004011062197 024 922STK17BA0.8710.120.090.164.2E−14Y
rs755810616134 858 499RP11-557H15.4A0.877--0.12--0.16--0.097.9E−14Y
rs62472014798 517 117TRRAPC0.9660.230.170.298.8E−14N
rs1848373321744 359 783ARL17BG0.7750.100.070.139.4E-14Y
rs78378222177 571 752TP53T0.9870.380.280.489.9E−14Y
rs67479522239 069 926FAM132BC0.556--0.08--0.10--0.061.3E−13Y
rs10865309258 984 870LINC01122C0.8630.120.090.151.3E−13N
rs1173250336140 511 519MIR3668T0.995--0.56--0.71--0.411.4E−13Y
rs115447786634 354 073NUDT3C0.9550.190.140.241.6E−13Y
rs428580410104 386 309SUFUT0.4410.080.060.102.2E−13Y
rs19580781470 354 858SMOC1A0.155--0.11--0.14--0.082.5E−13N
rs351589851668 796 746CDH1A0.6930.090.060.114.1E−13N
rs20233351910 695 959AP1M2A0.056--0.18--0.23--0.134.2E−13Y
rs1089381711127 951 980RP11-702B10.2A0.351--0.08--0.11--0.064.9E−13Y
rs7660098153176 878 261TBL1XR1CA0.432--0.08--0.10--0.065.3E−13Y
rs344065101209 936 964TRAF3IP3T0.7660.090.070.127.4E−13N
rs65384131293 749 125RP11-486A14.2G0.692--0.09--0.11--0.061.0E−12N
rs5575360551740 535 384STAT3C0.701--0.09--0.11--0.061.3E−12N
rs60152331163 177 539RP11-230B22.1G0.623--0.08--0.10--0.062.6E−12Y
rs733698961780 478 877FOXK2G0.9220.150.110.193.4E−12Y
rs10811408920 805 270FOCADT0.7770.090.070.124.1E−12Y
rs348175102 435 260GIN1G0.695--0.08--0.11--0.065.1E−12Y
rs7144662213113 365 480ATP11AG0.9100.130.100.175.8E−12N
rs81381972243 114 551A4GALTG0.5290.080.050.105.9E−12N
rs727550401564 342 757DAPK2G0.9450.170.120.217.1E−12Y
rs121466441195 492 878FAM76BA0.6180.080.060.109.6E−12Y
rs1171076037149 261 825ZNF767C0.9840.300.210.399.6E−12Y
rs109104761234 734 956IRF2BP2C0.4440.080.050.101.2E−11Y
rs15201953183 736 882ABCC5G0.509--0.07--0.10--0.051.3E−11Y
rs55693403984 320 639RP11-154D17.1T0.942--0.16--0.20--0.112.4E−11Y
rs1400737592152 356 937RIF1T0.3780.080.050.102.5E−11Y
rs61871633112 366 260CD81-AS1C0.913--0.13--0.17--0.092.7E−11Y
rs76241843916691 325AL022341.1A0.6160.090.060.112.7E−11Y
rs62553882991 497 782PCNPP2C0.9450.160.110.213.9E−11Y
rs10770059119 770 910SWAP70T0.3510.080.050.105.3E−11N
rs12650679469 771 836RP11-468N14.13A0.8710.110.080.145.4E−11Y
rs45418217148 446 377CUL1T0.7880.090.060.125.7E−11Y
rs1171119161914 529 082DDX39AC0.945--0.16--0.20--0.117.1E−11Y
rs109165271229 746 970TAF5LT0.495--0.07--0.09--0.058.1E−11Y
rs18444284145 574 196HHIP-AS1A0.8670.110.070.148.2E−11Y
rs13255193811 309 192FAM167AT0.457--0.07--0.09--0.051.2E−10Y
rs7595447457150 759 219SLC4A2CGTGTGTGAGT0.424--0.07--0.09--0.051.6E−10Y
rs12478953271 618 599ZNF638T0.339--0.07--0.10--0.051.8E−10Y
rs758263745312 395 972PPARGCA0.6830.080.050.101.9E−10Y
rs620545891681 068 748RP11-303E16.3T0.8750.110.070.142.3E−10Y
rs11815307512112 825 973HECTD4C0.9820.270.190.353.5E−10N
rs20110826110 734 999DDOG0.2220.080.060.114.1E−10Y
rs23371131846 452 327SMAD7A0.536--0.07--0.09--0.055.7E−10Y
rs113805257124 427 517GPR37T0.715--0.08--0.10--0.057.9E−10Y
rs785872071157 654 991RP11-734C14.2T0.6810.070.050.108.2E−10Y
rs21408757129 602 879RP11-306G20.1A0.1860.090.060.111.2E−09N
rs97830861225 588 376LBRT0.835--0.09--0.12--0.061.2E−09Y
rs677950553169 529 895LRRC34C0.776--0.08--0.11--0.051.6E−09Y
rs1393720521667 695 483PARD6AT0.995--0.46--0.61--0.311.7E−09Y
rs25359221473 447 240NAA0.609--0.07--0.09--0.052.4E−09Y
rs2001270947123 430 826RNU6-11PA0.9200.120.080.162.6E−09Y
rs110727631578 724 256IREB2A0.222--0.08--0.10--0.053.4E−09Y
rs76490453196 519 878PAK2T0.4060.070.040.097.1E−09Y
rs26720921581 870 620CTD-2034I4.1T0.7720.080.050.108.9E−09Y
rs64338912181 969 709AC068196.1G0.2990.070.050.099.7E−09Y
rs5740630851118 769 284RNA5SP56C0.993--0.43--0.57--0.281.0E−08Y
rs125149565177 635 181HNRNPABG0.919--0.12--0.16--0.081.4E−08Y
rs1113629981574 760 541UBL7-AS1A0.940--0.14--0.18--0.091.5E−08Y
rs5520001091185 682 778PICALMC0.8410.090.060.122.3E−08Y
rs743465671586 249 722AKAP13G0.944--0.13--0.18--0.093.0E−08N
rs44462373171 472 296PLD1C0.534--0.06--0.08--0.043.5E−08Y
rs5620381120 254 545PHGDHG0.3200.060.040.094.0E−08Y
rs11762972110101 786 635snoU13C0.9650.170.110.234.6E−08Y
rs1906297178144 310 590GPIHBP1G0.759--0.07--0.10--0.054.8E−08Y

aNot reported in [12, 37] or in the GWAS catalog (https://www.ebi.ac.uk/gwas/) to be associated with MCV.

Manhattan plot of the unstratified GWAS outcomes for MCV (n = 362 595). Y axis truncated at 1 × 10−320. Summary of genome-wide significant SNPs following distance-based clumping aNot reported in [12, 37] or in the GWAS catalog (https://www.ebi.ac.uk/gwas/) to be associated with MCV. Relationship between minor allele frequency and effect size.

GWAS of MCV stratified by alcohol intake

Analysis of the heterogenous effects between individuals with different alcohol intakes found that no variants reached the threshold for statistical significance (P < 2.4 × 10−4). SNP rs218264 was the closest to this threshold at P = 5.2 × 10−4, although both the low and heavy drinking groups showed significant associations with this variant (Table 3). No variants reached genome-wide significance (P < 5 × 10−8) when exploring the heterogeneity of allelic effects between the different drinking groups. Specific assessment of the alcohol metabolizing pathway found no evidence of an alcohol-related association between MCV and either the ADH or ALDH SNPs (Supplementary Material, Table S2).
Table 3

Summary of variants reaching nominal significance for heterogeneity of allelic effects (significance threshold: P < 2.1 × 10−4)

Low drinkers (n = 228 671)Heavy drinkers (n = 133 924)
SNP% change MCV95%LCI95%UCI P % change MCV95%LCI95%UCI P Heterogeneity P
rs218264−0.50−0.53−0.474.5 × 10−232−0.42−0.45−0.385.1 × 10−1045.2 × 10−4
rs855791−0.61−0.64−0.592.3 × 10−462−0.54−0.57−0.512.3 × 10−2305.9 × 10−4
rs144861591−1.15−1.20−1.115.0 × 10−487−1.03−1.09−0.973.8 × 10−2462.0 × 10−3
rs49362910.120.100.157.9 × 10−190.060.020.097.4 × 10−44.0 × 10−3
rs107586570.410.380.441.4 × 10−1390.340.300.382.9 × 10−630.01
rs243076−0.25−0.28−0.239.4 × 10−79−0.20−0.23−0.172.3 × 10−320.01
rs56142708−0.17−0.20−0.156.5 × 10−39−0.22−0.26−0.191.8 × 10−410.02
rs67971539−0.20−0.23−0.178.4 × 10−37−0.14−0.18−0.102.4 × 10−120.02
rs6592965−0.32−0.34−0.291.7 × 10−125−0.27−0.30−0.231.6 × 10−570.02
rs126506790.090.050.131.2 × 10−50.160.110.217.3 × 10−110.02
rs94717080.600.580.635.0 × 10−3690.550.510.593.6 × 10−1920.02
rs12582170−0.19−0.22−0.154.7 × 10−25−0.12−0.17−0.081.3 × 10−70.02
rs17296501−0.26−0.30−0.231.3 × 10−47−0.20−0.24−0.154.4 × 10−180.03
rs9801017−0.33−0.35−0.304.1 × 10−126−0.28−0.31−0.251.5 × 10−600.04
rs744014810.600.500.701.5 × 10−320.760.640.895.6 × 10−340.05

Allele score for alcohol metabolism pathway

The genetic score used as a proxy for acetaldehyde accumulation rate/speed of clearance in drinkers only was independent of confounding factors (i.e. covariates included in multivariate model). The frequencies of the effect alleles contributing to the allele score were as follows: rs1229984_T = 0.021; rs698_T = 0.588 and rs2228093_T = 0.121. We found no evidence for an association between MCV and the allele score (P = 0.53). There was however evidence that the allele score was associated with alcohol intake (P < 2 × 10−16). Categorization of the allele score demonstrated that this relationship with alcohol consumption was dose-dependent (negative direction), and thus, the score can be considered valid given current knowledge of alcohol metabolism and its relationship with intake (Supplementary Material, Table S3).

Phenome-wide analysis

We performed Phenomewide association analysis (PheWAS) to detect whether the variants implicated in MCV might impact other diseases or clinically relevant phenotypes. This showed that the SNPs contribute to a range of different diseases, with 71 SNP-outcome pairs reaching P < 4.8 ×10−7 (Supplementary Material, Table S4). The most consistent outcomes were observed for ICD-10 chapter IV codes, including disorders of mineral metabolism and disorders of lipoprotein metabolism and other lipidaemias. There was also strong evidence from three SNPs for a shared risk with neoplasms of the skin. Thyroid-related disorders were also found in two SNPs (rs2134814, rs592229), with evidence for both under- and overactive thyroid diagnoses. The G allele in rs2134814 was associated with increased MCV and hypothyroidism, while the T allele in rs592229 was associated with decreased MCV and hyperthyroidism. Other outcomes included diabetes, multiple sclerosis, hypertension, varicose veins and rheumatoid arthritis.

Mendelian randomization

Mendelian randomization analysis demonstrated a significant causal effect of alcohol consumption on MCV. Each copy of the effect allele at rs1229984 in ADH1B was associated with a 0.19 decrease in drinks per week in the work by Jorgenson et al. (20) and was also found to reduce MCV by 0.18 femtoliters (fL) (SE = 0.002; P = 0.002). However, the addition of rs7686419 (KLB) returned a null outcome with evidence of effect heterogeneity, although the effect size of rs7686419 for drinks per week was approximately 6-fold smaller than rs1229984 (20). Summary of variants reaching nominal significance for heterogeneity of allelic effects (significance threshold: P < 2.1 × 10−4)

Discussion

In the largest study undertaken to date, we have shown, as would be expected, that alcohol was clearly associated with an increase in MCV in a dose-dependent manner. However, the effects of alcohol on MCV were largely independent of genetic architecture, despite the association of MCV with genetic variation at 212 autosomal loci. Our analysis using Mendelian randomization provides evidence of a causal relationship between alcohol intake and MCV. However, we demonstrated a lack of association between alcohol metabolizing genes and MCV using a genetic score approach. Taken together, these findings support MCV as a marker of alcohol use disorder, although lack of specificity remains a substantial barrier in predictive accuracy and therefore clinical utility (3). The strengths of this study are as follows: (1) the large sample size for GWAS analyses, (2) post-GWAS analysis including fixed effect inverse-variance weighted meta-analysis to generate heterogeneity statistics, (3) the use of a mixed-model approach in GWAS to account for relatedness and maximize sample size and (4) use of allele scores to explore the functional consequences of alcohol metabolizing gene variants as a proxy for acetaldehyde accumulation. There are, however, several limitations. First, the alcohol measures were based on self-report. The accuracy of self-report alcohol consumption has been questioned due to under-coverage compared with sales data (21). Second, we restricted our analysis to those of white British ancestry to limit population structure variability on the outcomes. This limits generalizability of our findings to other ethnic groups. Third, we did not undertake formal replication of findings, but our top GWAS outcomes are consistent with those reported elsewhere (11,12,15–18). Finally, we considered including folate in our models. However, folate levels were not measured in the UKB and the prevalence of folate deficiency anaemia was low (<0.002%). The large sample size of the UKB enabled the detection of genetic variants with small effect sizes. The replication of findings in loci such as HBS1L-MYB, TMPRSS6 and CCND3, which have been identified in previous GWAS for MCV (11,12,15–18), supports the validity of our outcomes. Indeed, many of the low-frequency variants with smaller effect sizes were reported in an analysis of 36 blood cell traits (11). However, we also identified 108 new loci associated with MCV providing new biological insights. We observed associations between MCV and several loci involved in DNA modification through binding and/or processing alterations (e.g. ZNF165, TAF6, ZBTB38, ZKSCAN5, SPIDR). It is known that impaired DNA synthesis delays cell division resulting in macrocytosis (22). Of the new loci identified, rs13191659 (VN1R12P/LINC00240) has been associated with total iron binding capacity in Hispanics (23); DPP8 has been suggested as a candidate gene for mean corpuscular haemoglobin (MCH) in Europeans (24) and was identified as part of an LD block at 15q22.3 containing IGDCC4-DPP8-PTPLAD1-C15orf44-SLC24A1-DENND4A for MCH in Japanese (25); OBFC1 and MEGF11 have been associated with MCH but not MCV (26,27); PAK2 has been reported to have a role in eryptosis of erythrocytes, and therefore the effect of PAK2 on red blood cell indices might be greater than previously recognized (28); LDB1 influences erythrocyte development by the protein product acting as a cofactor for transcription factor complexes with, for example, Gata1, Tal1, E2A and Lmo2 (29). Indeed, the critical requirement for LDB1 during early-stage erythropoiesis has been demonstrated in rodent models (30). Furthermore, several of our lead SNPs were missense variants, including rs1047891 (EAF 0.684; P = 1.1 × 10−20) (CPS1) alongside more well-described MCV-associated SNPs such as rs855791 (EAF 0.440; P = 3.0 × 10−610) (TMPRSS6) and rs3811444 (EAF 0.667; P = 1.1 × 10−81) (TRIM58). rs1047891 is in the 3′ untranslated section of CPS1, a region reported to play a key role in glycine and serum homocysteine metabolism. Allelic variation in rs1047891 has been associated with various cardiometabolic traits (31,32) and lower platelet count (33). The substitution at this SNP (T-->N; p.Thr1412Asn) increases enzymatic activity and influences nitric oxide production (34), an important mediator of vascular function. MCV has been reported to be an independent predictor for cardiovascular events (35) and rs1047891 variation is therefore a potential pathway for this relationship. Stratification of participants by drinking status did not identify any loci that determined the effect of alcohol intake on MCV. This suggests that the pathways through which alcohol influences MCV are not mediated by genetic variation. This was supported by the causal inference for alcohol on MCV levels when using rs1229984 as a proxy for alcohol consumption in the Mendelian randomization analysis. However, the discriminatory power of MCV in identifying heavy alcohol use is modest given that alcohol accounts for only ~65% of MCV values above 100 fL (36). In addition, the turnover of erythrocytes is around 120 days meaning that recently abstinent individuals will present with evidence of alcohol consumption for several months. Using a genetic score to define alcohol metabolism, we did not find evidence to support that acetaldehyde accumulation is important in determining MCV levels. This is contrary to the findings in Asians for MCV (37) and other alcohol-related liver function in Europeans (38). The lack of association with MCV is likely to be due to the fact that rs1229984 (ADH1B) is rare in Europeans and the ubiquitous presence of active ALDH2, the enzyme primarily involved in the rapid metabolism of acetaldehyde to acetate (39). Similar results to our own for ALDH gene polymorphisms were reported in a study of 510 white alcohol-dependent patients (40). The PheWAS analysis showed SNP level pleiotropy for variants involved in MCV suggesting a shared genetic risk with a number of conditions. Many of these combinations have strong physiological connections with one another (e.g. mineral metabolism disorders and liver disease). The association between MCV and thyroid dysfunction is well described, with thyroid hormones being essential for erythropoiesis (41). Indeed, we found evidence to support the relationship between hypothyroidism and increased MCV (42) alongside hyperthyroidism and decreased MCV (43). Our findings suggest that some pathways, as mediated by rs2134814 (BACH2) and rs592229 (SKIV2L), convey shared genetic architecture for MCV and thyroid dysfunction. Other findings offer additional insight in areas of ongoing investigation such as the association between psoriasis and red blood cell deformability (44). In summary, we have demonstrated that the impact of alcohol consumption on MCV is independent of allelic variation and provided new biological insights into the genetic loci determining MCV itself. The role of acetaldehyde, although likely important in determining MCV, is difficult to measure in Europeans due to rare variation in alcohol metabolizing genes. Interindividual variability in MCV in the setting of moderate to heavy alcohol consumption is likely to be due to a complex (and at present incompletely understood) interaction between genetic factors, underlying medical conditions and lifestyle factors.

Materials and Methods

A complete description of the methods can be found in the Supplementary Material.

UKB

The UKB is a large population cohort of ~502 000 individuals from the United Kingdom aged 40–69 years at recruitment. Only white British participants were included in this study. Ethical approval for the UKB was gained from the Research Ethics Service (reference: 17/NW/0274), and written informed consent was obtained from all participants. Analyses were conducted under approved application 15110.

Alcohol consumption

Questions from the UKB baseline assessment were used to estimate alcohol consumption. We applied a standardized number of UK alcohol units to each drink to enable estimation of the number of units per week, as described previously (13).

MCV measurement

Components of full blood counts were measured in UKB participants using clinical haematology analysers at the centralized processing laboratory of the UK Biocenter (Stockport, UK). Full information on the protocol can be found elsewhere (45).

Multivariable analyses for predictors of MCV

MCV was natural log-transformed to normalize the distribution of residuals. Multivariable linear regression was applied to identify predictors of MCV. Analyses examined alcohol consumption as both a continuous and categorical predictor of MCV. All multivariable analyses were adjusted for age, sex, smoking status, history of hypothyroidism and vitamin B12 deficiency, and individuals with liver disease were removed due to the interaction between alcoholic liver disease risk and macrocytosis (7). Models were rerun with those reporting zero alcohol consumption removed.

Genetic analyses

In July 2017, UKB released genetic information (directly typed and imputed genotypes) for 487 406 individuals to approved collaborators. Genotyping, quality control and imputation were performed centrally by UKB and have been described previously (46).

GWAS analysis

Autosomal genetic association analysis was conducted for ln(MCV) using a linear mixed model in BOLT-LMM v2.3.4 (47), adjusted for genotyping array and covariates outlined in multivariable analyses plus alcohol consumption in units/week as a continuous variable. Distance-based clumping was used for defining loci. Genomic control adjustments were applied for standard errors and P-values.

Heterogeneity of allelic effects by drinking group

Variants reaching P < 5 × 10−8 and surviving distance-based clumping (i.e. lead SNPs) were explored for heterogeneous outcomes based on drinking category. GWAMA was used to run a fixed effect inverse-variance weighted meta-analysis on outcomes and generate heterogeneity statistics for allelic effects between groups, which is equivalent to fitting an interaction term (48). Any variant reaching the Bonferroni-corrected threshold (P < 0.05/‘number of lead SNPs from unstratified GWAS’) was considered statistically significant.

MCV heritability

To characterize the heritability of MCV, we applied single-trait LD­score regression through LD Hub v1.9.3 (http://ldsc.broadinstitute.org/ldhub/) (49).

Phenome­wide association analysis

Gene ATLAS (http://geneatlas.roslin.ed.ac.uk/) was used as a lookup for outcomes from PheWAS analysis performed on UKB traits (50).

Impact of genetic score for acetaldehyde on MCV

To test the assumption that acetaldehyde is important in MCV, we used genotype data for SNPs in ADH1B, ADH1C and ALDH1B to construct a genetic score. The SNPs rs1229984 (ADH1B), rs698 (ADH1C) and rs2228093 (ALDH1B) were used to generate an unweighted allele score based on number of ADH alleles increasing the metabolism of ethanol to acetaldehyde and the number of ALDH alleles slowing the metabolism of acetaldehyde to acetate. This score (0–6) was used as a continuous predictor alongside covariates previously outlined in multivariable analyses. The selected variants were independent (r2 < 0.01 for all SNP pairs).

Mendelian randomization

MR-Base v0.4.21 was used for performing Mendelian randomization to explore the causal relationship between alcohol consumption and MCV (51). The causal estimates between exposure and outcome were obtained using the two-sample Mendelian randomization inverse variance-weighted method. Results are reported using STROBE guidelines. A checklist can be found in the Supplementary Material. Click here for additional data file. Click here for additional data file.
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Journal:  Lancet       Date:  2019-06-15       Impact factor: 79.321

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Authors:  Howard J Edenberg; Jeanette N McClintick
Journal:  Alcohol Clin Exp Res       Date:  2018-11-11       Impact factor: 3.455

4.  Proteome analysis of erythrocytes lacking AMP-activated protein kinase reveals a role of PAK2 kinase in eryptosis.

Authors:  Christine Zelenak; Michael Föller; Ana Velic; Karsten Krug; Syed M Qadri; Benoit Viollet; Florian Lang; Boris Macek
Journal:  J Proteome Res       Date:  2011-02-22       Impact factor: 4.466

5.  Mean corpuscular volume and ADH1C genotype in white patients with alcohol-associated diseases.

Authors:  Leimin Sun; Inke R König; Arne Jacobs; Helmut K Seitz; Klaus Junghanns; Thomas Wagner; Diether Ludwig; Arne Jacrobs; Nils Homann
Journal:  Alcohol Clin Exp Res       Date:  2005-05       Impact factor: 3.455

6.  Red blood cell status in alcoholic and non-alcoholic liver disease.

Authors:  S Maruyama; C Hirayama; S Yamamoto; M Koda; A Udagawa; Y Kadowaki; M Inoue; A Sagayama; K Umeki
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Authors:  Oriol Canela-Xandri; Konrad Rawlik; Albert Tenesa
Journal:  Nat Genet       Date:  2018-10-22       Impact factor: 38.330

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Authors:  Po-Ru Loh; George Tucker; Brendan K Bulik-Sullivan; Bjarni J Vilhjálmsson; Hilary K Finucane; Rany M Salem; Daniel I Chasman; Paul M Ridker; Benjamin M Neale; Bonnie Berger; Nick Patterson; Alkes L Price
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Authors:  William J Astle; Heather Elding; Tao Jiang; Dave Allen; Dace Ruklisa; Alice L Mann; Daniel Mead; Heleen Bouman; Fernando Riveros-Mckay; Myrto A Kostadima; John J Lambourne; Suthesh Sivapalaratnam; Kate Downes; Kousik Kundu; Lorenzo Bomba; Kim Berentsen; John R Bradley; Louise C Daugherty; Olivier Delaneau; Kathleen Freson; Stephen F Garner; Luigi Grassi; Jose Guerrero; Matthias Haimel; Eva M Janssen-Megens; Anita Kaan; Mihir Kamat; Bowon Kim; Amit Mandoli; Jonathan Marchini; Joost H A Martens; Stuart Meacham; Karyn Megy; Jared O'Connell; Romina Petersen; Nilofar Sharifi; Simon M Sheard; James R Staley; Salih Tuna; Martijn van der Ent; Klaudia Walter; Shuang-Yin Wang; Eleanor Wheeler; Steven P Wilder; Valentina Iotchkova; Carmel Moore; Jennifer Sambrook; Hendrik G Stunnenberg; Emanuele Di Angelantonio; Stephen Kaptoge; Taco W Kuijpers; Enrique Carrillo-de-Santa-Pau; David Juan; Daniel Rico; Alfonso Valencia; Lu Chen; Bing Ge; Louella Vasquez; Tony Kwan; Diego Garrido-Martín; Stephen Watt; Ying Yang; Roderic Guigo; Stephan Beck; Dirk S Paul; Tomi Pastinen; David Bujold; Guillaume Bourque; Mattia Frontini; John Danesh; David J Roberts; Willem H Ouwehand; Adam S Butterworth; Nicole Soranzo
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