| Literature DB >> 34103789 |
I S Gandzha1, O V Kliushnichenko1, S P Lukyanets1.
Abstract
We propose a dynamical model for describing the spread of epidemics. This model is an extension of the SIQR (susceptible-infected-quarantined-recovered) and SIRP (susceptible-infected-recovered-pathogen) models used earlier to describe various scenarios of epidemic spreading. As compared to the basic SIR model, our model takes into account two possible routes of contagion transmission: direct from the infected compartment to the susceptible compartment and indirect via some intermediate medium or fomites. Transmission rates are estimated in terms of average distances between the individuals in selected social environments and characteristic time spans for which the individuals stay in each of these environments. We also introduce a collective economic resource associated with the average amount of money or income per individual to describe the socioeconomic interplay between the spreading process and the resource available to infected individuals. The epidemic-resource coupling is supposed to be of activation type, with the recovery rate governed by the Arrhenius-like law. Our model brings an advantage of building various control strategies to mitigate the effect of epidemic and can be applied, in particular, to modeling the spread of COVID-19.Entities:
Keywords: Arrhenius law; COVID-19; Economic resource; Epidemic; SIR model; Spreading process
Year: 2021 PMID: 34103789 PMCID: PMC8174143 DOI: 10.1016/j.chaos.2021.111046
Source DB: PubMed Journal: Chaos Solitons Fractals ISSN: 0960-0779 Impact factor: 9.922
Social control parameters and transmission rates for m, m, and ( day).
| Location | Description | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Home | 11.5 | 3.5 | 12.5 | 3.5 | 19.5 | 3.5 | ||||
| Shopping | 1.5 | 1.5 | 1.5 | 2.25 | 0.5 | 2.25 | ||||
| Transport | 3 | 1 | 2 | 1.5 | 0 | |||||
| Work | 8 | 3 | 8 | 3.25 | 4 | 3.25 | ||||
| Casual | Soft quarantine | Strict quarantine | ||||||||
Model parameters.
| Description | Our model value | Literature data | |
|---|---|---|---|
| Infected-to-susceptible transmission rate for location | see | ||
| Integral direct transmission rate (infected-to-susceptible) | |||
| Indirect transmission rate (infected-cloud-susceptible) in cloud | see | ||
| Scaled indirect transmission rate in cloud | see | ||
| Scaled indirect transmission rate in cloud | see | ||
| Integral indirect transmission rate (infected-cloud-susceptible) | |||
| Infected-cloud-susceptible transmission efficiency in cloud | |||
| Average pathogen shedding rate in cloud | see | ||
| Average pathogen decay rate in cloud | |||
| Average contact rate (pickup) of susceptible individuals with cloud | 24–480 | ||
| Average contact rate (shedding) of infected individuals with cloud | |||
| Infected-to-quarantine rate constant | |||
| Infected-to-recovered rate constant (with immunity) | |||
| Infected-to-susceptible rate constant (no immunity) | |||
| Integral rate constant for infected individuals, | |||
| Quarantine-to-recovered rate constant (with immunity) | |||
| Quarantine-to-susceptible rate constant (no immunity) | |||
| Fatality rate in the case of unlimited resource | |||
| Integral rate constant for quarantined individuals, | |||
| Resource consumption rate | |||
| Unit of time | 1 day | ||
| Average time spent in location | see | ||
| Minimum possible distance between two individuals | 1 m | ||
| Correlation radius (the maximum transmission distance) | 4 m | ||
| Average distance between individuals in location | see | ||
| Characteristic time of becoming infected at close contact | |||
| Average pathogen decay time outside the host | 0.1–14 | ||
| Average pathogen incubation period | 3–10 | ||
| Average quarantine/hospitalization time | |||
| Characteristic resource consumption time | |||
| Probability for the infected individual to recover without quarantine | 0.8 | 0.8 | |
| Probability of acquiring the immunity | 0.9 | ||
| Probability of the fatal scenario for the quarantined individual | 0.015 | 0.014 | |
| Minimum level of resource consumption (activation energy) | 0 | ||
| Resource acquisition rate | |||
| Resource inflow or outflow per unit time | 0 | ||
| Initial number density of infected individuals |
for COVID-19; for cholera outbreak; for pandemic influenza; depends on medium, ambient temperature, and surface type; 80% of COVID-19 cases are mild or asymptomatic
Fig. 1A schematic diagram of the dynamical model given by Eqs. (6) that depicts transitions between different compartments. The estimates of the transition rate constants , , , , , , , and between the compartment levels are given in Table A.1.
Fig. 2Effect of indirect transmission for fixed ( day). (a) No cloud: , and . (b) With cloud: , . (c) With cloud: , .
Main parameters of numerical solutions shown in Figs. 2 and 4.
| 0 | 2.5 | 0.245 | 55.4 | 0.081 | 63.7 | 0.193 | 0.132 | ||
| 0 | 2.5 | 0.245 | 40.0 | 0.081 | 48.3 | 0.193 | 0.132 | ||
| 3.5 | 0.337 | 30.5 | 0.097 | 38.2 | 0.210 | 0.059 | |||
| 5 | 0.425 | 23.8 | 0.107 | 31.0 | 0.216 | 0.030 | |||
| Quarantine scenario | 0.212 | 73.7 | 0.071 | 81.6 | 0.205 | 0.079 | |||
Fig. 3Susceptible-infected phase plane portrait for and various initial number densities of infected individuals .
Fig. 4Number densities of susceptible, infected, quarantined, and recovered individuals in the case of soft quarantine scenario with , , , () and , ().
Fig. 5Effect of limited resource on the number density of fatal cases in the case of and . The number density of quarantined individuals is the same in the cases of limited () and unlimited () resource. The model parameters are the same as in the example shown in Fig. 2b.
Fig. 6Effect of two different quarantine scenarios on the number density of fatal cases in the case of limited resource (). The model parameters for the quarantine scenarios (see Table 1) with and are , (no quarantine, , ); , (soft quarantine, , ); , (strict quarantine, , ).
Scaled indirect (infected-cloud-susceptible) transmission rates and in the case of the casual epidemic scenario (see Table 1). The aggregate indirect transmission rate is given by formula (18).
| Cloud | ||||||
|---|---|---|---|---|---|---|
| 11.5 | 3.5 | |||||
| 1.5 | 1.5 | |||||
| 3 | 1 | |||||
| 8 | 3 | |||||
Available estimates for COVID-19.
| Reference | Data source | |
|---|---|---|
| 1.5–3.5 | Imai et al. | Wuhan |
| 2.4–4.1 | Read et al. | Wuhan |
| 2.2–3.6 | Zhao et al. | Wuhan |
| 1.4–3.9 | Li et al. | Wuhan |
| 2.5–2.9 | Wu et al. | Wuhan |