Literature DB >> 34102905

Systematic analysis of molecular characterization and clinical relevance of m6A regulators in digestive system pan-cancers.

Tiankuo Kou1, Ruizhi Chai1, Lan Jin1, Zhigang Bai1, Yun Yang1, Yongtian Zhao2, Dongfang Wu2, Zhongtao Zhang1, Yingchi Yang1.   

Abstract

Digestive system tumors, which mainly include esophagus, stomach, colorectum, liver, pancreas, bile duct, and some other tumors, often have a poor prognosis. N6-methyladenosine (m6A) has critical functions in development and tumorigenesis and may help improve the molecular mechanisms of digestive system tumors. However, current understanding of the reconstitution of m6A in digestive system tumors is far from comprehensive. Herein, this study systematically analyzed multi-layered genomic characteristics and clinical relevance of m6A regulators in 1906 patients involving seven digestive system tumor types. We discovered that m6A regulators showed extensive genetic changes and highly consistent expression regulation. The m6A expression was closely related to the activity of cancer pathways. At the same time, we also identified m6A regulators significantly related to the common cancer pathways of digestive system tumors and specific cancer pathways of digestive tract and digestive glands. These cancer pathways may explain the prognostic differences of patients with digestive tract tumors. In addition, m6A regulators demonstrated strong potential in prognostic stratification and drug development, especially in multiple research cohorts on pancreatic cancer, pointing to a strong prognostic stratification capability of m6A regulators. Finally, a m6A scoring model significantly related to highly active ubiquitin-mediated proteolysis, mismatch repair, cell cycle, ebasal transcription factors was constructed and had a strong prognostic stratification ability in digestive gland tumors. The score showed a significant negative correlation with the tumor immune microenvironment. This study demonstrated that the similarities and difference of the action mechanism m6A regulators in the digestive tract and digestive gland tumor progression could guide potential drug development.

Entities:  

Keywords:  Bioinformatics; N6-methyladenosine; The Cancer Genome Atlas; copy number variation; digestive system pan-cancers

Mesh:

Substances:

Year:  2021        PMID: 34102905      PMCID: PMC8474987          DOI: 10.1177/15353702211019681

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  51 in total

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Journal:  Nature       Date:  2019-01-23       Impact factor: 49.962

Review 3.  Network medicine: a network-based approach to human disease.

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5.  Influence of preoperative and postoperative pelvic floor muscle training (PFMT) compared with postoperative PFMT on urinary incontinence after radical prostatectomy: a randomized controlled trial.

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Review 6.  Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits.

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Journal:  Nat Rev Cancer       Date:  2009-03-05       Impact factor: 60.716

Review 7.  Global Cancer Incidence and Mortality Rates and Trends--An Update.

Authors:  Lindsey A Torre; Rebecca L Siegel; Elizabeth M Ward; Ahmedin Jemal
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2015-12-14       Impact factor: 4.254

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Authors:  Douglas Hanahan; Robert A Weinberg
Journal:  Cell       Date:  2011-03-04       Impact factor: 41.582

9.  m6A RNA methylation regulators contribute to malignant progression and have clinical prognostic impact in gliomas.

Authors:  Rui-Chao Chai; Fan Wu; Qi-Xue Wang; Shu Zhang; Ke-Nan Zhang; Yu-Qing Liu; Zheng Zhao; Tao Jiang; Yong-Zhi Wang; Chun-Sheng Kang
Journal:  Aging (Albany NY)       Date:  2019-02-27       Impact factor: 5.682

10.  Construction of a 6-gene prognostic signature to assess prognosis of patients with pancreatic cancer.

Authors:  Jiayue Yang; Wei Shi; Shengwei Zhu; Cheng Yang
Journal:  Medicine (Baltimore)       Date:  2020-09-11       Impact factor: 1.817

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