Literature DB >> 34102891

Genomic signatures of spatially divergent selection at clownfish range margins.

René D Clark1, Matthew L Aardema2,3, Peter Andolfatto4, Paul H Barber5, Akihisa Hattori6, Jennifer A Hoey1,7, Humberto R Montes8, Malin L Pinsky1.   

Abstract

Understanding how evolutionary forces interact to drive patterns of selection and distribute genetic variation across a species' range is of great interest in ecology and evolution, especially in an era of global change. While theory predicts how and when populations at range margins are likely to undergo local adaptation, empirical evidence testing these models remains sparse. Here, we address this knowledge gap by investigating the relationship between selection, gene flow and genetic drift in the yellowtail clownfish, Amphiprion clarkii, from the core to the northern periphery of the species range. Analyses reveal low genetic diversity at the range edge, gene flow from the core to the edge and genomic signatures of local adaptation at 56 single nucleotide polymorphisms in 25 candidate genes, most of which are significantly correlated with minimum annual sea surface temperature. Several of these candidate genes play a role in functions that are upregulated during cold stress, including protein turnover, metabolism and translation. Our results illustrate how spatially divergent selection spanning the range core to the periphery can occur despite the potential for strong genetic drift at the range edge and moderate gene flow from the core populations.

Entities:  

Keywords:  clownfish; local adaptation; range margin; spatially divergent selection

Mesh:

Year:  2021        PMID: 34102891      PMCID: PMC8187997          DOI: 10.1098/rspb.2021.0407

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.530


  62 in total

1.  pophelper: an R package and web app to analyse and visualize population structure.

Authors:  R M Francis
Journal:  Mol Ecol Resour       Date:  2016-02-26       Impact factor: 7.090

2.  Ecology. The heartbreak of adapting to global warming.

Authors:  Tobias Wang; Johannes Overgaard
Journal:  Science       Date:  2007-01-05       Impact factor: 47.728

3.  Marine speciation on a small planet.

Authors:  S R Palumbi
Journal:  Trends Ecol Evol       Date:  1992-04       Impact factor: 17.712

4.  related: an R package for analysing pairwise relatedness from codominant molecular markers.

Authors:  Jack Pew; Paul H Muir; Jinliang Wang; Timothy R Frasier
Journal:  Mol Ecol Resour       Date:  2014-09-20       Impact factor: 7.090

5.  Adapt, move or die - how will tropical coral reef fishes cope with ocean warming?

Authors:  Adam Habary; Jacob L Johansen; Tiffany J Nay; John F Steffensen; Jodie L Rummer
Journal:  Glob Chang Biol       Date:  2016-09-19       Impact factor: 10.863

6.  Contemporary temperature-driven divergence in a Nordic freshwater fish under conditions commonly thought to hinder adaptation.

Authors:  Kathryn D Kavanagh; Thrond O Haugen; Finn Gregersen; Jukka Jernvall; L Asbjørn Vøllestad
Journal:  BMC Evol Biol       Date:  2010-11-11       Impact factor: 3.260

7.  Integrating phylogeographic and ecological niche approaches to delimitating cryptic lineages in the blue-green damselfish (Chromis viridis).

Authors:  Shang Yin Vanson Liu; Mao-Ning Tuanmu; Rita Rachmawati; Gusti Ngurah Mahardika; Paul H Barber
Journal:  PeerJ       Date:  2019-07-30       Impact factor: 2.984

8.  Assembling millions of short DNA sequences using SSAKE.

Authors:  René L Warren; Granger G Sutton; Steven J M Jones; Robert A Holt
Journal:  Bioinformatics       Date:  2006-12-08       Impact factor: 6.937

9.  Estimating pairwise relatedness in a small sample of individuals.

Authors:  J Wang
Journal:  Heredity (Edinb)       Date:  2017-08-30       Impact factor: 3.821

10.  Genetic patterns in peripheral marine populations of the fusilier fish Caesio cuning within the Kuroshio Current.

Authors:  Amanda S Ackiss; Christopher E Bird; Yuichi Akita; Mudjekeewis D Santos; Katsunori Tachihara; Kent E Carpenter
Journal:  Ecol Evol       Date:  2018-11-14       Impact factor: 2.912

View more
  2 in total

1.  Evolution in changing seas.

Authors:  Katie E Lotterhos; Molly Albecker; Geoffrey C Trussell
Journal:  Proc Biol Sci       Date:  2021-12-22       Impact factor: 5.349

2.  Genetic variability and the ecology of geographic range: A test of the central-marginal hypothesis in Australian scincid lizards.

Authors:  Sonal Singhal; John Wrath; Daniel L Rabosky
Journal:  Mol Ecol       Date:  2022-07-14       Impact factor: 6.622

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.