Literature DB >> 34102601

Network biology to uncover functional and structural properties of the plant immune system.

Bharat Mishra1, Nilesh Kumar1, M Shahid Mukhtar2.   

Abstract

In the last two decades, advances in network science have facilitated the discovery of important systems' entities in diverse biological networks. This graph-based technique has revealed numerous emergent properties of a system that enable us to understand several complex biological processes including plant immune systems. With the accumulation of multiomics data sets, the comprehensive understanding of plant-pathogen interactions can be achieved through the analyses and efficacious integration of multidimensional qualitative and quantitative relationships among the components of hosts and their microbes. This review highlights comparative network topology analyses in plant-pathogen co-expression networks and interactomes, outlines dynamic network modeling for cell-specific immune regulatory networks, and discusses the new frontiers of single-cell sequencing as well as multiomics data integration that are necessary for unraveling the intricacies of plant immune systems.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Keywords:  Host–microbe interaction; Integration; Multiomics; Network topology; Plant immunity; Systems biology

Year:  2021        PMID: 34102601     DOI: 10.1016/j.pbi.2021.102057

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  5 in total

1.  Genome wide study of cysteine rich receptor like proteins in Gossypium sp.

Authors:  Athar Hussain; Naila Asif; Abdul Rafay Pirzada; Azka Noureen; Javeria Shaukat; Akif Burhan; Madiha Zaynab; Ejaz Ali; Koukab Imran; Ayesha Ameen; Muhammad Arslan Mahmood; Aquib Nazar; M Shahid Mukhtar
Journal:  Sci Rep       Date:  2022-03-22       Impact factor: 4.996

2.  A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets.

Authors:  Bharat Mishra; Nilesh Kumar; M Shahid Mukhtar
Journal:  Comput Struct Biotechnol J       Date:  2022-04-21       Impact factor: 6.155

3.  A genome-wide comparative evolutionary analysis of zinc finger-BED transcription factor genes in land plants.

Authors:  Athar Hussain; Jinbao Liu; Binoop Mohan; Akif Burhan; Zunaira Nasim; Raveena Bano; Ayesha Ameen; Madiha Zaynab; M Shahid Mukhtar; Karolina M Pajerowska-Mukhtar
Journal:  Sci Rep       Date:  2022-07-19       Impact factor: 4.996

4.  A pipeline of integrating transcriptome and interactome to elucidate central nodes in host-pathogens interactions.

Authors:  Nilesh Kumar; Bharat Mishra; M Shahid Mukhtar
Journal:  STAR Protoc       Date:  2022-08-06

Review 5.  Overview of methods for characterization and visualization of a protein-protein interaction network in a multi-omics integration context.

Authors:  Vivian Robin; Antoine Bodein; Marie-Pier Scott-Boyer; Mickaël Leclercq; Olivier Périn; Arnaud Droit
Journal:  Front Mol Biosci       Date:  2022-09-08
  5 in total

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