| Literature DB >> 34101118 |
Mudan Zhang1,2, Siwei Yu2,3, Xuntao Yin4,5, Xianchun Zeng4,5, Xinfeng Liu4, ZhiYan Shen4, Xiaoyong Zhang4, Chencui Huang6, Rongpin Wang7,8,9.
Abstract
PURPOSE: To construct an auxiliary empirical antibiotic therapy (EAT) multi-class classification model for children with bacterial pneumonia using radiomics features based on artificial intelligence and low-dose chest CT images.Entities:
Keywords: Bacterial pneumonia; CT; Children; Multi-class classification; Radiomics
Mesh:
Substances:
Year: 2021 PMID: 34101118 PMCID: PMC8490241 DOI: 10.1007/s11604-021-01136-2
Source DB: PubMed Journal: Jpn J Radiol ISSN: 1867-1071 Impact factor: 2.374
Fig. 1The workflow of the construction of radiomics model
Fig. 2The inclusion and exclusion criteria
Fig. 3The architecture of automated segmentation model
Fig. 4Histogram of the intra-class correlation coefficient and inter-class correlation coefficient. After robustness test, a 1154 and b 1152 of the initial 1218 CT images features were attained
Clinical characteristics of children in the training and test sets (n = 389)
| Variable | Training set | Test set | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Gram-positive bacteria | Gram-negative bacteria | Atypical bacteria | Gram-positive bacteria | Gram-negative bacteria | Atypical bacteria | ||||
| Age (year, mean ± SD) | 2.20 ± 2.87 | 1.32 ± 1.91 | 4.43 ± 3.58 | 0.000 | 1.94 ± 2.54 | 0.85 ± 0.82 | 4.27 ± 3.85 | 0.002 | 0.370 |
| Sex | 0.053 | ||||||||
| Boy | 54 (28.0%) | 90 (46.6%) | 49 (25.4%) | 0.000 | 20 (33.9%) | 27 (45.8%) | 12 (20.3%) | 0.057 | |
| Girl | 43 (36.8%) | 37 (31.6%) | 37 (31.6%) | 0.735 | 5 (25.0%) | 5 (25.0%) | 10 (50.0%) | 0.287 | |
| Fever ( | 41 (42.2%) | 51 (40.1%) | 56 (65.1%) | 0.307 | 12 (30.8%) | 15 (38.5%) | 12 (30.8%) | 0.794 | 0.895 |
| Cough ( | 86 (88.6%) | 122 (96.0%) | 81 (94.1) | 0.326 | 23 (30.3%) | 31 (40.8%) | 22 (28.9%) | 0.383 | 0.472 |
| Other symptoms ( | 31 (31.9%) | 50 (39.2) | 25 (29.0) | 0.008 | 11 (30.6%) | 16 (44.4%) | 9 (25.0%) | 0.339 | 0.081 |
| Course time (day) | 12.86 ± 12.09 | 13.84 ± 14.00 | 10.10 ± 8.24 | 0.143 | 10.44 ± 7.95 | 12.50 ± 14.57 | 14.41 ± 12.40 | 0.184 | 0.875 |
| Length of stay (day) | 9.76 ± 5.82 | 9.57 ± 5.45 | 10.30 ± 5.39 | 0.363 | 8.24 ± 4.93 | 9.50 ± 4.80 | 8.59 ± 3.45 | 0.785 | 0.079 |
| Use of antibiotics before admission | 79 (29.4%) | 108 (40.1%) | 82 (30.5%) | 0.473 | 18 (27.7%) | 26 (40.0%) | 21 (32.3%) | 0.471 | 0.399 |
| With congenital cardiovascular diseases | 14 (50%) | 12 (42.9%) | 2 (7.1%) | 0.012 | 2 (50.0%) | 2 (50.0%) | 0(0.0%) | 0.617 | 0.359 |
| With congenital blood system diseases | 4 (28.6%) | 7 (50.0%) | 3 (21.4%) | 0.395 | 2 (50.0%) | 2 (50.0%) | 0 (0.0%) | 0.617 | 0.926 |
| Severe pneumonia | 24 (32.9%) | 29 (39.7%) | 20 (27.4%) | 0.434 | 10 (45.5%) | 9 (40.9%) | 3 (13.6%) | 0.142 | 0.517 |
Other symptoms including wheeze, muscle aches, headache, nausea, diarrhea, abdominal pain, shortness of breath and vomiting
Yr year; std standard deviation. Independent t test or Kruskal–Wallis H test for continuous variables and the Chi-square test or Fisher’s exact test for categorical variables. A p value < 0.05 was considered a statistically significant difference
Fig. 5Heat maps of the correlation of five features selected to construct radiomics model. Feature 1, 2, 3, 4, 5 are Original_glszm_SizeZoneNonUniformity, Log-sigma-1–0-mm-3D_firstorder_Maximum,Wavelet-HHH_gldm_LargeDependenceHighGrayLevelEmphasis, Original_glszm_GrayLevelVariance, Wavelet-LLL_firstorder_RootMeanSquared, respectively
The performance of nine popular classifiers in test set
| LR | SVM | DT | RF | AdaB | GB | XGB | KNN | SGD | |
|---|---|---|---|---|---|---|---|---|---|
| AUC (95% CI) | 0.68 (0.56, 0.75) | 0.73 (0.61, 0.79) | 0.59 (0.50, 0.69) | 0.68 (0.55, 0.72) | 0.63 (0.54, 0.71) | 0.66 (0.58,0.76) | 0.65 (0.59, 0.74) | 0.65 (0.54,0.71) | 0.6 (0.55.0.71) |
| ACC | 0.53 | 0.54 | 0.47 | 0.5 | 0.51 | 0.5 | 0.47 | 0.5 | 0.43 |
| SEN | 0.51 | 0.52 | 0.46 | 0.46 | 0.46 | 0.48 | 0.45 | 0.47 | 0.43 |
| SPE | 0.52 | 0.75 | 0.73 | 0.74 | 0.73 | 0.73 | 0.72 | 0.73 | 0.71 |
LR logistic regression, SVM support vector machine, DT decision tree, RF random forest, AdaB AdaBoost, GB gradient boosting, XGB XG boost, KNN K-nearest neighbors, SGD stochastic gradient descent, ROC receiver-operating characteristic, AUC area under the curve, ACC accuracy, SEN sensitivity, SPE specificity
Classified efficacy of five radiomic features in test set
| Feature type | AUC |
|---|---|
| Fused feature(SVM) | 0.73 |
| Fused feature(LR) | 0.68 |
| original_glszm_GrayLevelVariance | 0.64 |
| original_glszm_SizeZoneNonUniformity | 0.63 |
| log-sigma-1–0-mm-3D_firstorder_Maximum | 0.61 |
| wavelet-LLL_firstorder_RootMeanSquared | 0.61 |
| wavelet-HHH_gldm_LargeDependenceHighGrayLevelEmphasis | 0.55 |
Fig. 6Receiver-operating characteristic (ROC) curves in the training set (a) and test set (b)
Fig. 7Confusion matrix diagram in the training set (a) and test set (b)
Performance of SVM model in training and test set
| Models | Total patients | Positive patients | AUC | AUC(95% CI) | ACC | SEN | SPE | |
|---|---|---|---|---|---|---|---|---|
| Training set | Gram-positive bacterial pneumonia model | 311 | 98 | 0.72 | (0.63,0.81) | 0.72 | 0.42 | 0.86 |
| Gram-negative bacterial pneumonia | 311 | 127 | 0.71 | (0.61,0.80) | 0.66 | 0.72 | 0.63 | |
| Atypical bacterial pneumonia | 311 | 86 | 0.80 | (0.72,0.88) | 0.78 | 0.57 | 0.86 | |
| Average | 311 | 311 | 0.75 | (0.65,0.83) | 0.58 | 0.57 | 0.78 | |
| Test set | Gram-positive bacterial pneumonia | 78 | 24 | 0.68 | (0.58,0.75) | 0.69 | 0.29 | 0.87 |
| Gram-negative bacterial pneumonia | 78 | 32 | 0.66 | (0.58,0.76) | 0.56 | 0.72 | 0.46 | |
| Atypical bacterial pneumonia | 78 | 22 | 0.80 | (0.67,0.85) | 0.82 | 0.55 | 0.93 | |
| Average | 78 | 78 | 0.73 | (0.61,0.79) | 0.54 | 0.52 | 0.75 |
Positive patients refers to the number of patients with each group of bacterial pneumonia
AUC area under the curve, ACC accuracy, SEN sensitivity, SPE specificity