Literature DB >> 34101040

Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic.

Yuanyuan Feng1, Gautam Iyer2, Lei Li3.   

Abstract

We consider a susceptible, infected, removed (SIR) system where the transmission rate may be temporarily reduced for a fixed amount of time. We show that in order to minimize the total number of fatalities, the transmission rate should be reduced on a single contiguous time interval, and we characterize this interval via an integral condition. We conclude with a few numerical simulations showing the actual reduction obtained.

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Keywords:  Compartmental model; Epidemiology; SIR system

Mesh:

Year:  2021        PMID: 34101040      PMCID: PMC8185504          DOI: 10.1007/s00285-021-01615-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


Introduction

The SIR model was introduced by R. Ross and W. Hammer to model the spread of infectious diseases (see Kermack et al. 1927; Brauer and Castillo-Chavez 2012; Weiss 2013). In this model, we let S denote the fraction of individuals that are susceptible to the disease, I the fraction of individuals that are infectious, and R the fraction of individuals that are removed. Removed individuals are those who have contracted the disease and have either recovered and acquired immunity, or have died. The evolution of these three quantities is modelled by Here is rate at which infectious individuals transmit the disease to the susceptible population, and is the rate at which infectious individuals recover. Typically and are assumed to be model constants. However, there are situations where one may be able to temporarily alter these constants. One example of this is the current COVID-19 outbreak. Here non-pharmaceutical interventions such as quarantines and social distancing were employed to temporarily reduce the transmission rate (see for instance Ferguson et al. 2020; Rampini 2020; Maier and Brockmann 2020; Laaroussi and Rachik 2020). In order to study this scenario, we assume that the transmission rate  is piecewise constant, and can take on one of two values: the normal transmission rate, , and a reduced transmission rate, , when quarantines / social distancing measures are in effect. While these measures greatly reduce and may even completely stop the spread of the outbreak, for societal reasons one may not be able to impose them for extended periods of time. This leads to a natural and interesting mathematical question:To study this mathematically, we assume that a constant fraction of individuals who contract the disease will die.1 In this case, minimizing the total number of fatalities is equivalent to minimizing . Consequently, we will formulate all our results directly in terms of . We remark that without social distancing/quarantines can be computed by the conservation of (see the Proof of Lemma 2.1). Given a fixed limit T on the length of time social distancing / quarantines may be imposed, how should they be scheduled in order to minimize the total number of fatalities? Should the social distancing / quarantines be imposed in one contiguous interval, or broken up into multiple intervals? Should it be imposed early, when very few individuals are infected, or later when the infection levels are higher? Formally, in equations (1.1a)–(1.1c) the set of times when social distancing/quarantines are in effect may be an arbitrary measurable set. However, it is only practical to impose and lift quarantines finitely many times, and thus we restrict our attention to this situation. The main result of this paper shows that in order to minimize , it is always better to impose social distancing/quarantines in a single contiguous window of time, as opposed to splitting it up into multiple intervals (of the same total length). Moreover, the best time window to impose social distancing/quarantines is often close to the time when the infection peaks, and we characterize this time window analytically. This is stated precisely below.

Theorem 1.1

Fix and let be the collection of all sets such that is a finite union of intervals with total length T. Given define byfor some constants , and . Let , , be the solution towith fixed initial data , , . Then, the set of times that minimizes is always a single continuous interval of length T, and at least one of the following hold: If , then the first case above always holds. If instead , then there exists such that the second case above holds for all . The minimizing interval is [0, T]. The minimizing interval  is characterized by the integral condition

Remark

From the proof we will see that the above can be estimated by Recall that the basic reproduction number, denoted by , is defined to be the ratio . When the transmission rate is slower than the recovery rate, and the infection doesn’t spread. In this case the fraction of the population that is infected decreases monotonically. Theorem 1.1 states that the total number of infected people is minimized if social distancing/quarantines are imposed at time , and this is not unexpected. The more interesting case above is when . In this case , and the infection will spread through the population. One might now wonder whether it is more advantageous to impose social distancing/quarantines early when very few people are infected, or if its better to wait until a larger fraction of the population is infected, or if one should split up the quarantine into many short intervals. Theorem 1.1 guarantees that then the most effective fixed length quarantine is a always a single contiguous time interval. Moreover, when the second assertion of Theorem 1.1 holds, this interval contains the time when the infection peaks. To see this, note that equation (1.3) and the fact that S is decreasing implies that is positive at the start of , and negative at the end of . Thus, from (1.1b) we see that the disease is spreading at the start of , attains its peak sometime during the time interval , and is dying out at the end of . Hence the time interval that minimizes must include the point when the number of infected individuals attains its peak. (See Fig. 2 for a simulation illustrating this).
Fig. 2

Left: I, R vs t both with a 30 day, optimally scheduled, quarantine and without any quarantine. Right: The value of versus the time when a 30 day quarantine is started

We also remark that when and , either conclusion (1) or (2) in Theorem 1.1 may hold, and we can not determine which one. It is easy to see that if the population already has herd immunity (i.e. ), then the first conclusion in Theorem 1.1 must necessarily hold. When then either conclusion (1) or (2) may hold, and we can not apriori determine which.

Discussion and further questions

Before proceeding with the proof of Theorem 1.1, we now provide a brief summary of related results and open questions that merit further study. First we note that Theorem 1.1 can be reformulated more generally as an optimal control problem. Namely, consider the case where adjusting the severity of the quarantine results in a variable transmission rate . There is however a social and economic cost associated to imposing a quarantine measures, and this cost increases with the severity of the quarantine. Of course, not imposing a quarantine results in more infected individuals and there is a social and economic cost associated with their care. Combining these, we can quantify the total cost over the course of the infection aswhere and are increasing functions representing the costs associated to imposing quarantines, and the care of infected individuals respectively. One can now study how the cost function  can be minimized, subject to various practical constraints. The constraint we study in this paper requires  to be piecewise constant, only take on the values or and . Under this constraint, Theorem 1.1 finds the optimal  minimizing the cost function  with and . Another constraint studied by Miclo et al. (2020) is to only consider solutions for which , for some exogenously specified level . Here represents the health care capacity, above which the mortality rate may be dramatically higher. Under this constraint with the cost functions  and , Miclo et al. (2020) show that the quarantine policy that minimizes  is one where the infection grows unchecked until , after which one imposes a quarantine and adjusts the severity to hold until herd immunity is achieved. Recently, due to the COVID19 pandemic, many authors have studied various other costs and policies both numerically and analytically, and we refer the reader to Behncke (2000), Alvarez et al. (2020), Kissler et al. (2020), Kruse and Strack (2020) and Toda (2020). Another aspect that merits further study is a spatially-dependent system considering diffusion and population demography. In this case the SIR system becomes a family of reaction diffusion systems (Fitzgibbon et al. 2001, 2004; Laaroussi and Rachik 2020). In this setting one may naturally formulate an analog of Theorem 1.1 with the additional spatial component: given an upper bound on the product of the total time the quarantine is imposed and the size of the region it is imposed on, what is the optimal quarantine policy that minimizes the total number of fatalities? This, however, is much harder to analyze and depends intrinsically on the spatial geometry, and we do not know if there will be a simple description of the optimal quarantine policy. A third most important factor not considered in this paper is that of heterogeneous populations. In a large group of humans there are various factors (such as social habits, or inherent tolerance) that contribute towards variance of the population. One accounts for this by using a heterogeneous SIR model which divides the population into several homogeneous groups. Counter-intuitively, in this case, a more severe quarantine can result in a higher fraction of the population being infected (see Britton et al. 2020); an effect that is impossible to observe in a homogeneous population. Numerous authors (see for instance Chikina and Pegden 2020b; Rampini 2020; Acemoglu et al. 2020) have also observed numerically that for heterogeneous populations quarantine measures that are targeted to each group are an order of magnitude more effective than un-targeted ones. Theorem 1.1 can again be naturally formulated in this setting. The proof, however, does not generalize, and we presently are unable to analytically characterize the optimal quarantine strategy in this case. Finally, we mention one novel feature that is unique to the recent COVID19 outbreak: asymptomatic carriers – individuals who transmit the disease but show no symptoms. Modeling their behavior is a newly developing, active area of study and we refer the reader to Maier and Brockmann (2020), Chen et al. (2020) and Ganyani et al. (2020). At present we do not know how best to model their behavior and how to reformulate Theorem 1.1 to capture their effect.

Plan of this paper

In Sect. 2 we state two lemmas required to prove Theorem 1.1, and prove Theorem 1.1 modulo these lemmas. In Sect. 3 we prove both these lemmas. Finally, in Sect. 4 we perform a few numerical simulations to illustrate Theorem 1.1.

Proof of Theorem 1.1

Our aim in this section is to prove Theorem 1.1. The first step is to restrict our attention to social distancing/quarantines imposed on a contiguous interval, and show that the condition (1.3) is necessary. Fix , and set . Given any , we will subsequently denote to be the solution to (1.2) with initial data , , . Given any with , definewhere solve (1.1a)–(1.1b) with and initial data and . The necessity of (1.3) for contiguous intervals can now be stated as follows.

Lemma 2.1

Let and . Suppose and . Given , define . Then, for all sufficiently small , we must have . Moreover, if for some , and sufficiently small , then we must have . On the other hand, suppose . Now given any , define . Then, for all sufficiently small , we must have . Moreover, if for some and and sufficiently small , then we must have . Next we show that attains a minimum, and this minimum is attained when is a single contiguous interval. Note that the set of all consisting of m disjoint intervals can be identified with the set defined byIndeed, we identify the ordered tuple with the set defined byLet denote the closure of , and define . Note that through the above identification, the set , represents a set of times with (or less) disjoint intervals of total length T. We will now show that even though is an unbounded set, the function attains a minimum on , and this minimum must be attained on .

Lemma 2.2

If , then the infimum of over all is attained at some point . Momentarily postponing the proofs of Lemmas 2.1 and 2.2 , we prove Theorem 1.1.

Proof of Theorem 1.1

Note that can be viewed as an increasing union of the ’s. By repeatedly applying Lemma 2.2, we see that for any , the minimizer of over all consisting of m intervals or less must be attained when is a single contiguous interval. In this case, Lemma 2.1 forces the condition (1.3) to be satisfied, unless . This proves that either assertion (1) or assertion (2) in Theorem 1.1 must hold. For the last part of the theorem, suppose first . Since and this forces for all . Thus condition (1.3) can not be satisfied by any interval , and hence the first assertion of Theorem 1.1 must hold. Finally, it only remains to show that when , there exists such that if then (1.3) holds for the minimizing interval . Since we already know that one of the two conclusions (1) or (2) in Theorem 1.1 must hold, it suffices to show that the conclusion (1) does not hold. To do this, by Lemma 2.1 it suffices to show that for all . To see , observe that (1.1b) impliesfor all . Consequently,for all . Since by assumption, the above implies that for all , provided is sufficiently small. This forces , concluding the proof of Theorem 1.1.

Proof of Lemmas

This section is devoted to the proofs of Lemmas 2.1 and 2.2 . We begin with Lemma 2.1.

Proof of Lemma 2.1

Note that as , , and hence . Since , minimizing is the same as maximizing . In order to do this we study the behavior of as a function of . Note first that when are constants, solutions to (1.1a)–(1.1b) conserve the quantityThis can readily be checked by differentiating and checking . Thus, when no quarantine is imposed, one can compute by solving the transcendental equationIn our case is not constant and there is no such explicit equation determining . However, is piecewise constant, and so must be constant on every connected component of the complement of . Hence, we consider the family of curves , whereNote above is simply the reciprocal of the basic reproduction number . Each of the curves meet the line at most twice (see Fig. 1). The intersection when correspond to unstable equilibria, and so as , will approach some point with . Thus, in order to maximize , we look for curves that meet the segment at an S-coordinate that is as large as possible. Implicitly differentiating we see that , and so smaller values of c will lead to larger values of .
Fig. 1

Various curves in the S-I plane with . Only the portion of the curves that intersect the region , , are shown

We will now prove the first assertion in Lemma 2.1. The proof of the second assertion is similar. Choose , assume and let for some small . For notational convenience, defineand letWe first claimOnce (3.1) is established, our assumption on Q implies . Using the argument in the previous paragraph, this in turn will imply and hence as desired. To prove (3.1), define the functions and byUsing the fact thatfor all and , we noteWe now estimate each term on the right. The first two terms can be estimated quickly. Indeed equation (1.2) showsand henceThe crux of the matter is the last term. For this, let and note that (1.1a) and (3.3) implyUsing (3.5)–(3.7) and the above we seeUsing (1.1a) and (3.3) this simplifies toand henceNow, using (3.6), (3.7) and (3.8) in (3.1) we seeSincewe seeproving (3.1) as claimed. As explained earlier, this will prove  as desired. It remains to show that if for some and we have , then we must have . To see this, we consider the phase portrait the curve vs for times , and phase portion of the curve vs for times . Since the times we consider are after the end of the intervals and , both these curves must be members of . We already know , and hence . This means that in the I vs S plane, the curve parametrized by for must lie below the curve parametrized by for . Thus if for some , , we must have . This finishes the proof. Various curves in the S-I plane with . Only the portion of the curves that intersect the region , , are shown An immediate corollary to Lemma 2.1 is that if the minimizer  is not a contiguous interval, then the integral condition (1.3) must be satisfied on the last contiguous interval in .

Lemma 3.1

Suppose , with , and . Let , and . If then there exists such that for we have . If then there exists such that for we have .

Proof

Applying Lemma 2.1 with with initial data , immediately yields Lemma 3.1. (Note, while the convention was used throughout Sect. 2, it is not required for Lemma 2.1, and was not used in the proof of Lemma 2.1. Thus our application of Lemma 2.1 above is valid.) Our next result establishes an “order preserving” property of solutions to (1.2). Fix and with . Let , and consider the following two solutions to (1.2). The first, denoted by S, I, with initial data , and the second, denoted by with initial data . In the S-I plane, must the curve lie below that of (S, I)? One might, at first sight, think this is certainly true. However, since depends on t, the system (1.2) is not autonomous, and so it is possible for the curves and (S, I) to cross each other. Various such non-monotonicity phenomena were studied in Chikina and Pegden (2020a). We will also provide a simple example of this shortly. Fortunately, it turns out that if additionally we assume , then must eventually lie below the curve (S, I). This is all we need in the proof, and is stated as our next lemma.

Lemma 3.2

Let with , and . Let , (S, I) solve (1.2) with initial data , , and let solve (1.2) with initial data , . If , then for all sufficiently small  we must have . (Here , and .) Let , , , and . We will first showif and only ifTo see this, defineWe claimfrom which the equivalence of (3.10) and (3.11) immediately follows. The proof of (3.12) is very similar to the proof of Lemma 2.1. Let  be defined by (3.2), and let . Since is conserved, we notefor all . From (1.1a), we seeand henceTaylor expanding as in the proof of Lemma 2.1 immediately showsConsequently,from which (3.12) follows. This establishes the equivalence of (3.10) and (3.11). Now we use this equivalence to prove Lemma 3.2. Using (3.9) we see that is equivalent toThis impliesas desired. Before proceeding further, we provide an example showing that Lemma 3.2 is false if we drop the assumption that . To do this note that in the above proof we establish the equivalence between (3.10) and (3.11) without using the assumption that . Thus, if we produce an example where (3.11) is false, then (3.10) will also be false, which is what we want. To construct this example, suppose is very small, and . Choose T such that , and let . By making sufficiently small, T can be made arbitrarily large. We choose large enough so thatNow for , note (1.1b) impliesHence the left hand side in (3.11) can be estimated byby our choice of . This in turn implies (3.10) is false, and hence  for all sufficiently small , contrary to the conclusion of Lemma 3.2. Next, to prove of Lemma 2.2, we need a few elementary properties of (1.2).

Lemma 3.3

Given , let solve (1.2) with initial data and . For every , the function is strictly decreasing, and . There exists such that for every , we have For every , the functions is continuous on . Moreover, .

Proof of Lemma 3.3

From (1.2) we see that for all . This implies , showing is a decreasing function. Since is always a bounded set, satisfy (1.1a)–(1.1b) with constant  for all large time. In this case it is well known that  decreases exponentially to 0 (see for instance Weiss 2013; Brauer and Castillo-Chavez 2012). For the second assertion, note that for all . Thus if we are done. Now we suppose . In this case if , then we simply choose . If not, suppose for some we have . Since is decreasing, this implies for all . Using (1.2) we see that this meansSince the total length of  is T, this impliesUsing this in (1.2) shows thatSince by assumption , this impliesSince is independent of , we obtain the second assertion of the lemma. Finally it remains to prove that is continuous on . To fix notation, identify with a subset of using (2.2). By standard ODE theory we know that the function is continuous. After time , we note that  satisfy (1.1a)–(1.1b) with . In this case it is know thatThe implicit function theorem now shows is continuous. Since , and , this in turn implies is continuous on . Finally, we need to rule out the possibility that the infimum of over is attained at . This is our next Lemma.

Lemma 3.4

Let be as in Lemma 3.3, and let for some . Fix . For any , define . The function is increasing in t. Note that for , we must have . Hence, by (2.1) we must have . Now by Lemma 2.1 part (1), we see that for all sufficiently small , finishing the proof. With the above tools, we are now ready to prove Lemma 2.2.

Proof of Lemma 2.2

Let be as in Lemma 3.3. Fix any . Define byAs before, we identify with . Let denote the closure of in . Note that for any , if the last contiguous interval in  starts after time , then Lemma 3.4 implies that shifting this interval to the left decreases . Moreover, if more than one contiguous interval in  starts after , then repeatedly applying Lemma 3.4 shows that they can be merged and shifted left to decrease , and can be shifted to be smaller than . This impliesSince is continuous (Lemma 3.3), and is compact, the infimum must be attained. Hence, there exists such that . We now claim that when , we must have . To prove this it suffices to show that . Suppose, for sake of contradiction, that . Let and be as in Lemma 3.1. Since minimizes by assumption, Lemma 3.1 implies that . Then, for all so that . Let be small and define byBy continuity of solutions, there must exist such that when is small enough. Define , and observe that by Lemma 3.1 we must have . Now, since , Lemma 3.2 implies that  for small , as the gap between and tends to zero when by continuity. Thus we have produced such that , contradicting our assumption. This finishes the proof.

Numerical simulations

We conclude this paper with numerical simulations showing how significant the reduction in is. We will also fix the time window when social distancing/quarantines are in effect to be 30 days (i.e. ). Choose , corresponding to a recovery time of 14 days, and consider a disease for which normally, and when social distancing/quarantines are in effect. Figure 2 (left) shows how the fraction of infected and removed individuals evolves with time. In this case we see that reduces from 0.82 when no quarantine is imposed to 0.70 when a 30 day contiguous quarantine is optimally imposed. As expected, we see that the optimal quarantine starts a little before the (unquarantined) infection levels peak, and ends a little after it. Since the population attains herd immunity exactly when the infection levels peak, the unquarantined population attains herd immunity sometime during the optimal quarantine. Left: I, R vs t both with a 30 day, optimally scheduled, quarantine and without any quarantine. Right: The value of versus the time when a 30 day quarantine is started For comparison, we also plot how varies based on the start of a 30 day quarantine (Fig. 2, right). Here we see that when the quarantine is started too early, or too late, it has almost no impact on the value of . Finally, in Fig. 3 we show how varies when a 30 day quarantine is optimally imposed. The two parameters we vary are , the basic reproduction number under normal circumstances, and , the basic reproduction number when quarantines/social distancing are imposed. Here we see that the reduction in is larger when is smaller.
Fig. 3

Minimum value of when a 30 day quarantine is optimally imposed. The figure on the left plots vs for a few different values of . The figure on the right is a hot/cold plot of  where varies along the horizontal axis, and varies along the vertical axis

Minimum value of when a 30 day quarantine is optimally imposed. The figure on the left plots vs for a few different values of . The figure on the right is a hot/cold plot of  where varies along the horizontal axis, and varies along the vertical axis
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