Literature DB >> 34096501

Temporally delayed linear modelling (TDLM) measures replay in both animals and humans.

Yunzhe Liu1,2,3, Raymond J Dolan1,3,4, Cameron Higgins5, Hector Penagos6, Mark W Woolrich5, H Freyja Ólafsdóttir7, Caswell Barry8, Zeb Kurth-Nelson3,9, Timothy E Behrens4,5.   

Abstract

There are rich structures in off-task neural activity which are hypothesized to reflect fundamental computations across a broad spectrum of cognitive functions. Here, we develop an analysis toolkit - temporal delayed linear modelling (TDLM) - for analysing such activity. TDLM is a domain-general method for finding neural sequences that respect a pre-specified transition graph. It combines nonlinear classification and linear temporal modelling to test for statistical regularities in sequences of task-related reactivations. TDLM is developed on the non-invasive neuroimaging data and is designed to take care of confounds and maximize sequence detection ability. Notably, as a linear framework, TDLM can be easily extended, without loss of generality, to capture rodent replay in electrophysiology, including in continuous spaces, as well as addressing second-order inference questions, for example, its temporal and spatial varying pattern. We hope TDLM will advance a deeper understanding of neural computation and promote a richer convergence between animal and human neuroscience.
© 2021, Liu et al.

Entities:  

Keywords:  MEG/EEG; decoding; electrophysiology; human; mouse; neuroscience; reactivation; replay

Mesh:

Year:  2021        PMID: 34096501      PMCID: PMC8318595          DOI: 10.7554/eLife.66917

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  67 in total

1.  Memory of sequential experience in the hippocampus during slow wave sleep.

Authors:  Albert K Lee; Matthew A Wilson
Journal:  Neuron       Date:  2002-12-19       Impact factor: 17.173

Review 2.  Path integration and the neural basis of the 'cognitive map'.

Authors:  Bruce L McNaughton; Francesco P Battaglia; Ole Jensen; Edvard I Moser; May-Britt Moser
Journal:  Nat Rev Neurosci       Date:  2006-08       Impact factor: 34.870

Review 3.  Circular analysis in systems neuroscience: the dangers of double dipping.

Authors:  Nikolaus Kriegeskorte; W Kyle Simmons; Patrick S F Bellgowan; Chris I Baker
Journal:  Nat Neurosci       Date:  2009-05       Impact factor: 24.884

4.  Online evaluation of novel choices by simultaneous representation of multiple memories.

Authors:  Helen C Barron; Raymond J Dolan; Timothy E J Behrens
Journal:  Nat Neurosci       Date:  2013-09-08       Impact factor: 24.884

5.  Diversity in neural firing dynamics supports both rigid and learned hippocampal sequences.

Authors:  Andres D Grosmark; György Buzsáki
Journal:  Science       Date:  2016-03-25       Impact factor: 47.728

6.  Experience replay is associated with efficient nonlocal learning.

Authors:  Yunzhe Liu; Marcelo G Mattar; Nathaniel D Daw; Raymond J Dolan; Timothy E J Behrens
Journal:  Science       Date:  2021-05-21       Impact factor: 47.728

7.  Replay of neuronal firing sequences in rat hippocampus during sleep following spatial experience.

Authors:  W E Skaggs; B L McNaughton
Journal:  Science       Date:  1996-03-29       Impact factor: 47.728

Review 8.  Cellular bases of hippocampal EEG in the behaving rat.

Authors:  G Buzsáki; L W Leung; C H Vanderwolf
Journal:  Brain Res       Date:  1983-10       Impact factor: 3.252

9.  Awake replay of remote experiences in the hippocampus.

Authors:  Mattias P Karlsson; Loren M Frank
Journal:  Nat Neurosci       Date:  2009-06-14       Impact factor: 24.884

10.  Representational similarity analysis - connecting the branches of systems neuroscience.

Authors:  Nikolaus Kriegeskorte; Marieke Mur; Peter Bandettini
Journal:  Front Syst Neurosci       Date:  2008-11-24
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  5 in total

Review 1.  Decoding cognition from spontaneous neural activity.

Authors:  Yunzhe Liu; Matthew M Nour; Nicolas W Schuck; Timothy E J Behrens; Raymond J Dolan
Journal:  Nat Rev Neurosci       Date:  2022-03-08       Impact factor: 34.870

2.  Dopamine enhances model-free credit assignment through boosting of retrospective model-based inference.

Authors:  Lorenz Deserno; Rani Moran; Jochen Michely; Ying Lee; Peter Dayan; Raymond J Dolan
Journal:  Elife       Date:  2021-12-09       Impact factor: 8.140

Review 3.  The shallow cognitive map hypothesis: A hippocampal framework for thought disorder in schizophrenia.

Authors:  Ayesha Musa; Safia Khan; Minahil Mujahid; Mohamady El-Gaby
Journal:  Schizophrenia (Heidelb)       Date:  2022-04-07

4.  Impaired neural replay of inferred relationships in schizophrenia.

Authors:  Matthew M Nour; Yunzhe Liu; Atheeshaan Arumuham; Zeb Kurth-Nelson; Raymond J Dolan
Journal:  Cell       Date:  2021-06-30       Impact factor: 41.582

5.  Relationship Between Replay-Associated Ripples and Hippocampal N-Methyl-D-Aspartate Receptors: Preliminary Evidence From a PET-MEG Study in Schizophrenia.

Authors:  Matthew M Nour; Katherine Beck; Yunzhe Liu; Atheeshaan Arumuham; Mattia Veronese; Oliver D Howes; Raymond J Dolan
Journal:  Schizophr Bull Open       Date:  2022-07-07
  5 in total

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