| Literature DB >> 34094025 |
Ariane Sadr-Nabavi1,2,3, Samaneh Bouromand-Noughabi4,5, Naser Tayebi-Meybodi4, Kimia Dadkhah6, Nafiseh Amini1, Alfons Meindl7, Mohammad Reza Abbaszadegan1,2,6.
Abstract
OBJECTIVES: Dermatopontin (DPT) is an extracellular matrix protein that plays roles in increasing the activity of transforming growth factor-β (TGF-β) and induction of cell quiescence. These roles suggest a tumor suppressor function for DPT. This study aimed to investigate changes in DPT gene expression in colorectal cancer providing a better understanding of its carcinogenesis.Entities:
Keywords: Colorectal cancer; Dermatopontin; Real-Time PCR; Sanger sequencing; TGF-β
Year: 2021 PMID: 34094025 PMCID: PMC8143710 DOI: 10.22038/IJBMS.2021.46422.10720
Source DB: PubMed Journal: Iran J Basic Med Sci ISSN: 2008-3866 Impact factor: 2.699
Primer sequences used in real-time PCR and PCRs of DPT exons
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| Primer sequences used in real-time PCR: | |||
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| ATATTCCTGCTGGCTAAC | 168 |
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| ACAGTCGTATTCAGTCATC | ||
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| GGAAGGTGAAGGTCGGAGTCA | 101 |
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| GTCATTGATGGCAACAATATCCACT | ||
| Primer sequences used in PCRs of DPT exons: | |||
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| TCAAAAACATCTGGAAGCC | 485 |
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| ATTCCTTGAGAGTCTAGCAG | ||
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| GGTCTGTGTATGTGTCACTGTTC | 248 |
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| AAGCTAGAGCACTTCCTAGG | ||
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| GTCTTCTGTTTGCTCCCAGC | 323 |
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| GAAATTTTCACTTGTATTCTACG | ||
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| TGT TTC CCC AGCAGC GATTC | 425 |
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| AGCATGCGCACTGTATATG | ||
DPT: Dermatopontin
Figure 1A: The standard curve shows 98% efficacy for DPT amplification. B: Amplification curves related to 2 tumoral tissues and their corresponding controls
Comparison of DPT expression (by fold changes) between different groups of patients (real-time PCR data)
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| 24 | -0.59 ± 3.63 |
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| 14 | 0.24 ± 5.16 | |
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| 14 | 0.44 ± 3.48 |
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| 20 | -0.52 ± 4.76 | |
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| 14 | -0.02 ± 4.48 |
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| 22 | -0.52 ± 4.23 | |
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| 1 | 1.66 ± 4.22 | |
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| 26 | -0.77 ± 4.59 |
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| 11 | 0.90 ± 3.05 | |
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| 25 | -0.54 ± 4.53 |
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| 12 | 0.28 ± 3.62 | |
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| 10 | -1.66 ± 4.95 |
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| 28 | 0.08 ± 4.26 |
*N: number of samples; †Mean±SD: mean±standard deviation
DPT: Dermatopontin
Comparison of DPT expression (based on DPT expression category) between different groups of patients (real-time PCR data)
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| 37.5% (9)* | 37.5% (9)* | 25.0% (6)* |
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| 35.7% (5)* | 21.4% (3)* | 42.9% (6)* | |
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| 28.6% (4)* | 28.6% (4)* | 42.9 (6)* |
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| 40.9% (9)* | 31.8% (7)* | 27.3% (6)* | |
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| 0% (0)* | 100% (1)* | 0% (0)* | |
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| 38.5% (10)* | 34.6% (9)* | 26.9% (7)* |
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| 27.3% (3)* | 27.3% (3)* | 45.5% (5)* | |
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| 36% (9)* | 36% (9)* | 28% (7)* |
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| 33.3% (4)* | 25% (3)* | 4.7% (5)* | |
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| 50% (5)* | 30% (3)* | 20% (2)* |
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| 32% (9)* | 32% (9)* | 36% (10)* | |
*Number of samples
DPT: Dermatopontin
Results of exon sequencing of DPT gene in tumoral tissues of 12 colorectal cancer cases with DPT under expression
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| 1 | Thr 80 Thr homo* | - | - | 215 del G het† |
| 2 | - | - | - | 215 ins A het† |
| 3 | - | - | +41 IVS‡ 3 A>G | - |
| 4 | - | - | - | 215 del G het† |
| 5 | Thr 80 Thr homo* | - | - | 215 del G het† |
| 6 | - | Val 139 Ser | - | 215 del G het† |
| 7 to 12 | - | - | - | - |
* homo: homozygote; † het: heterozygote; ‡ IVS: intronic region
DPT: Dermatopontin
Figure 3A: Probable way of DPT tumor suppression. B, C, and D: Theoretical possibilities for DPT overexpression in colorectal cancer. A primary increase in DPT may induce tumor aggressiveness through the TGF-β signaling pathway (B). High levels of TGF-β may lead to DPT overexpression (C). Diminished activity of the TGF-β pathway in the cell may induce DPT overexpression to restore the pathway (D)