Literature DB >> 34092886

Excitation-Scanning Hyperspectral Imaging as a Means to Discriminate Various Tissues Types.

Joshua Deal1,2, Peter F Favreau3, Carmen Lopez4, Malvika Lall5, David S Weber6, Thomas C Rich2,7, Silas J Leavesley1,2,7.   

Abstract

Little is currently known about the fluorescence excitation spectra of disparate tissues and how these spectra change with pathological state. Current imaging diagnostic techniques have limited capacity to investigate fluorescence excitation spectral characteristics. This study utilized excitation-scanning hyperspectral imaging to perform a comprehensive assessment of fluorescence spectral signatures of various tissues. Immediately following tissue harvest, a custom inverted microscope (TE-2000, Nikon Instruments) with Xe arc lamp and thin film tunable filter array (VersaChrome, Semrock, Inc.) were used to acquire hyperspectral image data from each sample. Scans utilized excitation wavelengths from 340 nm to 550 nm in 5 nm increments. Hyperspectral images were analyzed with custom Matlab scripts including linear spectral unmixing (LSU), principal component analysis (PCA), and Gaussian mixture modeling (GMM). Spectra were examined for potential characteristic features such as consistent intensity peaks at specific wavelengths or intensity ratios among significant wavelengths. The resultant spectral features were conserved among tissues of similar molecular composition. Additionally, excitation spectra appear to be a mixture of pure endmembers with commonalities across tissues of varied molecular composition, potentially identifiable through GMM. These results suggest the presence of common autofluorescent molecules in most tissues and that excitation-scanning hyperspectral imaging may serve as an approach for characterizing tissue composition as well as pathologic state. Future work will test the feasibility of excitation-scanning hyperspectral imaging as a contrast mode for discriminating normal and pathological tissues.

Entities:  

Keywords:  Fluorescence; Hyperspectral; Linear Spectral Unmixing; Microscopy; Spectroscopy

Year:  2017        PMID: 34092886      PMCID: PMC8173709          DOI: 10.1117/12.2251682

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  7 in total

1.  Histometrics: improvement of the dynamic range of fluorescently stained proteins resolved in electrophoretic gels using hyperspectral imaging.

Authors:  A M Woodward; N Kaderbhai; M Kaderbhai; A Shaw; J Rowland; D B Kell
Journal:  Proteomics       Date:  2001-11       Impact factor: 3.984

2.  Thin-film tunable filters for hyperspectral fluorescence microscopy.

Authors:  Peter Favreau; Clarissa Hernandez; Ashley Stringfellow Lindsey; Diego F Alvarez; Thomas Rich; Prashant Prabhat; Silas J Leavesley
Journal:  J Biomed Opt       Date:  2014-01       Impact factor: 3.170

3.  Hyperspectral imaging microscopy for identification and quantitative analysis of fluorescently-labeled cells in highly autofluorescent tissue.

Authors:  Silas J Leavesley; Naga Annamdevula; John Boni; Samantha Stocker; Kristin Grant; Boris Troyanovsky; Thomas C Rich; Diego F Alvarez
Journal:  J Biophotonics       Date:  2011-10-11       Impact factor: 3.207

4.  Excitation-scanning hyperspectral imaging microscope.

Authors:  Peter F Favreau; Clarissa Hernandez; Tiffany Heaster; Diego F Alvarez; Thomas C Rich; Prashant Prabhat; Silas J Leavesley
Journal:  J Biomed Opt       Date:  2014-04       Impact factor: 3.170

5.  LED-based endoscopic light source for spectral imaging.

Authors:  Craig M Browning; Samuel Mayes; Peter Favreau; Thomas C Rich; Silas J Leavesley
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-07

6.  Three dimensional measurement of cAMP gradients using hyperspectral confocal microscopy.

Authors:  Thomas C Rich; Naga Annamdevula; Andrea L Britain; Samuel Mayes; Peter F Favreau; Silas J Leavelsey
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-09

7.  An approach for characterizing and comparing hyperspectral microscopy systems.

Authors:  Naga S Annamdevula; Brenner Sweat; Peter Favreau; Ashley S Lindsey; Diego F Alvarez; Thomas C Rich; Silas J Leavesley
Journal:  Sensors (Basel)       Date:  2013-07-19       Impact factor: 3.576

  7 in total

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