| Literature DB >> 34091862 |
Aleksandra Augusciak-Duma1, Karolina L Stepien2, Marta Lesiak2, Ewa Gutmajster3, Agnieszka Fus-Kujawa2, Malwina Botor2, Aleksander L Sieron2.
Abstract
Abdominal aortic aneurysm refers to abnormal, asymmetric distension of the infrarenal aortic wall due to pathological remodelling of the extracellular matrix. The distribution of enzymes remodelling the extracellular matrix and their expression patterns in the affected tissue are largely unknown. The goal of this work was to investigate the expression profiles of 20 selected genes coding for metalloproteinases and their inhibitors in the proximal to the distal direction of the abdominal aortic aneurysm. RNA samples were purified from four lengthwise fragments of aneurysm and border tissue obtained from 29 patients. The quantities of selected mRNAs were determined by real-time PCR to reveal the expression patterns. The genes of interest encode collagenases (MMP1, MMP8, MMP13), gelatinases (MMP2, MMP9), stromelysins (MMP3, MMP7, MMP10, MMP11, MMP12), membrane-type MMPs (MMP14, MMP15, MMP16), tissue inhibitors of metalloproteinases (TIMP1, TIMP2, TIMP3, TIMP4), and ADAMTS proteinases (ADAMTS1, ADAMTS8, and ADAMTS13). It was found that MMP, TIMP, and ADAMTS are expressed in all parts of the aneurysm with different patterns. A developed aneurysm has such a disturbed expression of the main participants in extracellular matrix remodelling that it is difficult to infer the causes of the disorder development. MMP12 secreted by macrophages at the onset of inflammation may initiate extracellular matrix remodelling, which, if not controlled, initiates a feedback loop leading to aneurysm formation.Entities:
Keywords: Abdominal aortic aneurysm; Angiogenesis; Extracellular matrix; Metalloproteases; Remodelling
Mesh:
Substances:
Year: 2021 PMID: 34091862 PMCID: PMC8357691 DOI: 10.1007/s13353-021-00642-3
Source DB: PubMed Journal: J Appl Genet ISSN: 1234-1983 Impact factor: 3.240
Fig. 1Abdominal aortic aneurysm collected during an open aortic repair (OAR) schematically showing the plan of partitioning of the tissue. From each segment, pieces of ~ 4 mm × 4 mm × 2–4 mm were subjected immediately to RNA isolation and purification (boxed)
Alphabetical list of genes used in the study with appropriate assay IDs (Roche) and HGNC symbols. Four reference genes are listed at the beginning of the table
| No | Assay ID | Human gene symbol | Description |
|---|---|---|---|
| 1 | 141139 | Glyceraldehyde-3-phosphate dehydrogenase [Source: HGNC Symbol; Acc: 4141] | |
| 2 | 144221 | Glucuronidase, beta [Source: HGNC Symbol; Acc: 4696] | |
| 3 | 102088 | Peptidylprolyl isomerase A (cyclophilin A) [Source: HGNC Symbol; Acc: 9253] | |
| 4 | 102119 | Small nucleolar RNA, C/D box 32A [Source: HGNC Symbol; Acc: 10159] | |
| 5 | 102984 | ADAM metallopeptidase with thrombospondin type 1 motif 1 [Source: HGNC Symbol; Acc: 217] | |
| 6 | 108591 | ADAM metallopeptidase with thrombospondin type 1 motif, 8 [Source:HGNC Symbol;Acc:224] | |
| 7 | 109363 | ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source: HGNC Symbol; Acc: 1366] | |
| 8 | 148270 | Matrix metallopeptidase 1 (interstitial collagenase) [Source: HGNC Symbol; Acc: 7155] | |
| 9 | 139230 | Matrix metallopeptidase 2 (gelatinase A, 72 kDa gelatinase, 72 kDa type IV collagenase) [Source: HGNC Symbol; Acc: 7166] | |
| 10 | 103167 | Matrix metallopeptidase 3 (stromelysin 1, progelatinase) [Source: HGNC Symbol; Acc: 7173] | |
| 11 | 104396 | Matrix metallopeptidase 7 (matrilysin, uterine) [Source: HGNC Symbol; Acc: 7174] | |
| 12 | 146302 | Matrix metallopeptidase 8 (neutrophil collagenase) [Source: HGNC Symbol; Acc:7175] | |
| 13 | 136019 | Matrix metallopeptidase 9 (gelatinase B, 92 kDa, gelatinase, 92 kDa, type IV collagenase) [Source: HGNC Symbol; Acc: 7176] | |
| 14 | 108842 | Matrix metallopeptidase 10 (stromelysin 2) [Source: HGNC Symbol; Acc: 7156] | |
| 15 | 148278 | Matrix metallopeptidase 11 (stromelysin 3) [Source: HGNC Symbol; Acc: 7157] | |
| 16 | tbd | Matrix metallopeptidase 12 (macrophage elastase) [Source: HGNC Symbol; Acc: 7158] | |
| 17 | 140652 | Matrix metallopeptidase 13 (collagenase 3) [Source: HGNC Symbol; Acc: 7159] | |
| 18 | 109081 | Matrix metallopeptidase 14 (membrane-inserted) [Source: HGNC Symbol; Acc: 7160] | |
| 19 | 108327 | Matrix metallopeptidase 15 (membrane-inserted) [Source: HGNC Symbol; Acc: 7161] | |
| 20 | 108880 | Matrix metallopeptidase 16 (membrane-inserted) [Source: HGNC Symbol; Acc: 7162] | |
| 21 | 147557 | TIMP metallopeptidase inhibitor 1 [Source: HGNC Symbol; Acc: 11820] | |
| 22 | 110664 | TIMP metallopeptidase inhibitor 2 [Source: HGNC Symbol; Acc: 11821] | |
| 23 | 101221 | TIMP metallopeptidase inhibitor 3 [Source: HGNC Symbol; Acc: 11822] | |
| 24 | 112044 | TIMP metallopeptidase inhibitor 4 [Source: HGNC Symbol; Acc: 11823] |
Fig. 2Relative expression of selected genes encoding matrix metalloproteinases and matrix metalloprotease inhibitors in aneurysm and surrounding tissues representing the four gene groups. Non-parametric Mann–Whitney test and T-test (for MMP11) were performed (* p < 0.05, ** p < 0.05). a, group I; b, group II; c, group III; and d, group IV. The grey line represents the trend in the expression gradient
Fold change of expression between parts of aneurysm
| Gene | Proximal vs aneurysm sac | Aneurysm sac vs distal part | Proximal vs distal |
|---|---|---|---|
| Group I | |||
| 2,19975 | |||
| -3,39204 | 2,92517 | -1,1596 | |
| -2,28174 | 2,20776 | -1,03351 | |
| -1,06421 | |||
| -1,92413 | -1,07369 | -2,06593 | |
| -1,89143 | 1,2481 | -1,51544 | |
| -1,72753 | -2,50842 | -4,33338 | |
| -1,28329 | |||
| -1,21837 | |||
| 1,03951 | -1,40714 | ||
| 1,10869 | -1,1706 | ||
| Group II | |||
| -1,65547 | -1,06107 | ||
| -1,18729 | -1,26522 | ||
| -1,13957 | -1,17196 | ||
| Group III | |||
| -1,05705 | 1,00192 | -1,05502 | |
| 1,09707 | -1,1213 | -1,02208 | |
| 1,11656 | -1,0644 | 1,04901 | |
| GROUP IV | |||
| -1,51556 | 1,34533 | -1,12654 | |
| 1,10681 | -1,27731 | -1,15405 | |
| 1,91792 | -1,85845 | 1,032 | |
Statistically significant data are marked in bold. Non-parametric Mann–Whitney test and T-test (for MMP11) were performed (* p < 0.05, ** p < 0.05)