Literature DB >> 34091032

Subspace-constrained approaches to low-rank fMRI acceleration.

Harry T Mason1, Nadine N Graedel2, Karla L Miller1, Mark Chiew1.   

Abstract

Acceleration methods in fMRI aim to reconstruct high fidelity images from under-sampled k-space, allowing fMRI datasets to achieve higher temporal resolution, reduced physiological noise aliasing, and increased statistical degrees of freedom. While low levels of acceleration are typically part of standard fMRI protocols through parallel imaging, there exists the potential for approaches that allow much greater acceleration. One such existing approach is k-t FASTER, which exploits the inherent low-rank nature of fMRI. In this paper, we present a reformulated version of k-t FASTER which includes additional L2 constraints within a low-rank framework. We evaluated the effect of three different constraints against existing low-rank approaches to fMRI reconstruction: Tikhonov constraints, low-resolution priors, and temporal subspace smoothness. The different approaches are separately tested for robustness to under-sampling and thermal noise levels, in both retrospectively and prospectively-undersampled finger-tapping task fMRI data. Reconstruction quality is evaluated by accurate reconstruction of low-rank subspaces and activation maps. The use of L2 constraints was found to achieve consistently improved results, producing high fidelity reconstructions of statistical parameter maps at higher acceleration factors and lower SNR values than existing methods, but at a cost of longer computation time. In particular, the Tikhonov constraint proved very robust across all tested datasets, and the temporal subspace smoothness constraint provided the best reconstruction scores in the prospectively-undersampled dataset. These results demonstrate that regularized low-rank reconstruction of fMRI data can recover functional information at high acceleration factors without the use of any model-based spatial constraints.
Copyright © 2021. Published by Elsevier Inc.

Keywords:  Acceleration; Low Rank; Low Resolution Priors; Temporal Resolution; Temporal Smoothing; Tikhonov Regularization; fMRI; k-t FASTER

Year:  2021        PMID: 34091032     DOI: 10.1016/j.neuroimage.2021.118235

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  3 in total

1.  OSCILLATE: A low-rank approach for accelerated magnetic resonance elastography.

Authors:  Grace McIlvain; Alexander M Cerjanic; Anthony G Christodoulou; Matthew D J McGarry; Curtis L Johnson
Journal:  Magn Reson Med       Date:  2022-06-01       Impact factor: 3.737

2.  The risk of bias in denoising methods: Examples from neuroimaging.

Authors:  Kendrick Kay
Journal:  PLoS One       Date:  2022-07-01       Impact factor: 3.752

3.  Ultrahigh Resolution fMRI at 7T Using Radial-Cartesian TURBINE Sampling.

Authors:  Nadine N Graedel; Karla L Miller; Mark Chiew
Journal:  Magn Reson Med       Date:  2022-07-04       Impact factor: 3.737

  3 in total

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