Literature DB >> 34088936

Deep denoising for multi-dimensional synchrotron X-ray tomography without high-quality reference data.

Allard A Hendriksen1, Minna Bührer2, Laura Leone3, Marco Merlini3, Nicola Vigano4, Daniël M Pelt5,6, Federica Marone2, Marco di Michiel4, K Joost Batenburg5,6.   

Abstract

Synchrotron X-ray tomography enables the examination of the internal structure of materials at submicron spatial resolution and subsecond temporal resolution. Unavoidable experimental constraints can impose dose and time limits on the measurements, introducing noise in the reconstructed images. Convolutional neural networks (CNNs) have emerged as a powerful tool to remove noise from reconstructed images. However, their training typically requires collecting a dataset of paired noisy and high-quality measurements, which is a major obstacle to their use in practice. To circumvent this problem, methods for CNN-based denoising have recently been proposed that require no separate training data beyond the already available noisy reconstructions. Among these, the Noise2Inverse method is specifically designed for tomography and related inverse problems. To date, applications of Noise2Inverse have only taken into account 2D spatial information. In this paper, we expand the application of Noise2Inverse in space, time, and spectrum-like domains. This development enhances applications to static and dynamic micro-tomography as well as X-ray diffraction tomography. Results on real-world datasets establish that Noise2Inverse is capable of accurate denoising and enables a substantial reduction in acquisition time while maintaining image quality.

Entities:  

Year:  2021        PMID: 34088936     DOI: 10.1038/s41598-021-91084-8

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  23 in total

1.  Probing the structure of heterogeneous diluted materials by diffraction tomography.

Authors:  Pierre Bleuet; Eléonore Welcomme; Eric Dooryhée; Jean Susini; Jean-Louis Hodeau; Philippe Walter
Journal:  Nat Mater       Date:  2008-04-20       Impact factor: 43.841

Review 2.  Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction.

Authors:  Chinmay Belthangady; Loic A Royer
Journal:  Nat Methods       Date:  2019-07-08       Impact factor: 28.547

3.  Self-supervised learning of physics-guided reconstruction neural networks without fully sampled reference data.

Authors:  Burhaneddin Yaman; Seyed Amir Hossein Hosseini; Steen Moeller; Jutta Ellermann; Kâmil Uğurbil; Mehmet Akçakaya
Journal:  Magn Reson Med       Date:  2020-07-02       Impact factor: 4.668

4.  Dynamic oxygen-17 MRI with adaptive temporal resolution using golden-means-based 3D radial sampling.

Authors:  Yuning Gu; Huiyun Gao; Kihwan Kim; Yuchi Liu; Ciro Ramos-Estebanez; Yu Luo; Yunmei Wang; Xin Yu
Journal:  Magn Reson Med       Date:  2020-12-25       Impact factor: 4.668

5.  A deep convolutional neural network using directional wavelets for low-dose X-ray CT reconstruction.

Authors:  Eunhee Kang; Junhong Min; Jong Chul Ye
Journal:  Med Phys       Date:  2017-10       Impact factor: 4.071

6.  Using X-ray tomoscopy to explore the dynamics of foaming metal.

Authors:  Francisco García-Moreno; Paul Hans Kamm; Tillmann Robert Neu; Felix Bülk; Rajmund Mokso; Christian Matthias Schlepütz; Marco Stampanoni; John Banhart
Journal:  Nat Commun       Date:  2019-08-21       Impact factor: 14.919

Review 7.  X-ray computed tomography in life sciences.

Authors:  Shelley D Rawson; Jekaterina Maksimcuka; Philip J Withers; Sarah H Cartmell
Journal:  BMC Biol       Date:  2020-02-27       Impact factor: 7.431

8.  Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography.

Authors:  Andreas Hauptmann; Felix Lucka; Marta Betcke; Nam Huynh; Jonas Adler; Ben Cox; Paul Beard; Sebastien Ourselin; Simon Arridge
Journal:  IEEE Trans Med Imaging       Date:  2018-06       Impact factor: 11.037

9.  Dose optimization approach to fast X-ray microtomography of the lung alveoli.

Authors:  Goran Lovric; Sébastien F Barré; Johannes C Schittny; Matthias Roth-Kleiner; Marco Stampanoni; Rajmund Mokso
Journal:  J Appl Crystallogr       Date:  2013-06-07       Impact factor: 3.304

View more
  1 in total

1.  Cycloidal CT with CNN-based sinogram completion and in-scan generation of training data.

Authors:  Daniël M Pelt; Oriol Roche I Morgó; Charlotte Maughan Jones; Alessandro Olivo; Charlotte K Hagen
Journal:  Sci Rep       Date:  2022-01-18       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.