Nick Sarn1,2, Stetson Thacker1,3, Hyunpil Lee1, Charis Eng4,5,6,7. 1. Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA. 2. Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA. 3. Cleveland Clinic Lerner College of Medicine, Case Western Reserve University, Cleveland, OH, 44195, USA. 4. Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA. engc@ccf.org. 5. Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA. engc@ccf.org. 6. Cleveland Clinic Lerner College of Medicine, Case Western Reserve University, Cleveland, OH, 44195, USA. engc@ccf.org. 7. Germline High Risk Focus Group, Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA. engc@ccf.org.
Abstract
BACKGROUND: Autism spectrum disorder (ASD) has a strong genetic etiology. Germline mutation in the tumor suppressor gene PTEN is one of the best described monogenic risk cases for ASD. Animal modeling of cell-specific Pten loss or mutation has provided insight into how disruptions to the function of PTEN affect neurodevelopment, neurobiology, and social behavior. As such, there is a growing need to understand more about how various aspects of PTEN activity and cell-compartment-specific functions, contribute to certain neurological or behavior phenotypes. METHODS: To understand more about the relationship between Pten localization and downstream effects on neurophenotypes, we generated the nuclear-predominant PtenY68H/+ mouse, which is identical to the genotype of some PTEN-ASD individuals. We subjected the PtenY68H/+ mouse to morphological and behavioral phenotyping, including the three-chamber sociability, open field, rotarod, and marble burying tests. We subsequently performed in vivo and in vitro cellular phenotyping and concluded the work with a transcriptomic survey of the PtenY68H/+ cortex, which profiled gene expression. RESULTS: We observe a significant increase in P-Akt downstream of canonical Pten signaling, macrocephaly, decreased sociability, decreased preference for novel social stimuli, increased repetitive behavior, and increased thigmotaxis in PtenY68H/+ six-week-old (P40) mice. In addition, we found significant microglial activation with increased expression of complement and neuroinflammatory proteins in vivo and in vitro accompanied by enhanced phagocytosis. These observations were subsequently validated with RNA-seq and qRT-PCR, which revealed overexpression of many genes involved in neuroinflammation and neuronal function, including oxytocin. Oxytocin transcript was fivefold overexpressed (P = 0.0018), and oxytocin protein was strongly overexpressed in the PtenY68H/+ hypothalamus. CONCLUSIONS: The nuclear-predominant PtenY68H/+ model has clarified that Pten dysfunction links to microglial pathology and this associates with increased Akt signaling. We also demonstrate that Pten dysfunction associates with changes in the oxytocin system, an important connection between a prominent ASD risk gene and a potent neuroendocrine regulator of social behavior. These cellular and molecular pathologies may related to the observed changes in social behavior. Ultimately, the findings from this work may reveal important biomarkers and/or novel therapeutic modalities that could be explored in individuals with germline mutations in PTEN with ASD.
BACKGROUND: Autism spectrum disorder (ASD) has a strong genetic etiology. Germline mutation in the tumor suppressor gene PTEN is one of the best described monogenic risk cases for ASD. Animal modeling of cell-specific Pten loss or mutation has provided insight into how disruptions to the function of PTEN affect neurodevelopment, neurobiology, and social behavior. As such, there is a growing need to understand more about how various aspects of PTEN activity and cell-compartment-specific functions, contribute to certain neurological or behavior phenotypes. METHODS: To understand more about the relationship between Pten localization and downstream effects on neurophenotypes, we generated the nuclear-predominant PtenY68H/+ mouse, which is identical to the genotype of some PTEN-ASD individuals. We subjected the PtenY68H/+ mouse to morphological and behavioral phenotyping, including the three-chamber sociability, open field, rotarod, and marble burying tests. We subsequently performed in vivo and in vitro cellular phenotyping and concluded the work with a transcriptomic survey of the PtenY68H/+ cortex, which profiled gene expression. RESULTS: We observe a significant increase in P-Akt downstream of canonical Pten signaling, macrocephaly, decreased sociability, decreased preference for novel social stimuli, increased repetitive behavior, and increased thigmotaxis in PtenY68H/+ six-week-old (P40) mice. In addition, we found significant microglial activation with increased expression of complement and neuroinflammatory proteins in vivo and in vitro accompanied by enhanced phagocytosis. These observations were subsequently validated with RNA-seq and qRT-PCR, which revealed overexpression of many genes involved in neuroinflammation and neuronal function, including oxytocin. Oxytocin transcript was fivefold overexpressed (P = 0.0018), and oxytocin protein was strongly overexpressed in the PtenY68H/+ hypothalamus. CONCLUSIONS: The nuclear-predominant PtenY68H/+ model has clarified that Pten dysfunction links to microglial pathology and this associates with increased Akt signaling. We also demonstrate that Pten dysfunction associates with changes in the oxytocin system, an important connection between a prominent ASD risk gene and a potent neuroendocrine regulator of social behavior. These cellular and molecular pathologies may related to the observed changes in social behavior. Ultimately, the findings from this work may reveal important biomarkers and/or novel therapeutic modalities that could be explored in individuals with germline mutations in PTEN with ASD.
It is well established that germline mutations in PTEN predispose individuals to autism spectrum disorder (ASD) and rank among the most common monogenic etiologies [1-13]. We and others have shown that 7–20% of individuals with ASD and concurrent macrocephaly harbor germline mutations in PTEN, which when extrapolated across all cases of ASD may account for 0.5–5% of those cases [5, 7, 8, 13–15]. In addition to ASD, germline PTEN mutations cause subsets of Cowden syndrome (CS, OMIM #158350), Bannayan-Riley Ruvalcaba Syndrome (BRRS), Proteus syndrome (OMIM #176920), and Proteus-like syndrome [16]. Irrespective of clinical syndrome and pathophysiology, anyone diagnosed with a germline PTEN mutation carries the molecular diagnosis of PTEN Hamartoma Tumor Syndrome (PHTS, OMIM #601728) [16, 17].PTEN has been well characterized as a tumor suppressor gene that removes the 3’ phosphate group from phosphatidylinositol(3,4,5)-triphosphate (PIP3), thereby inhibiting the PI3K/AKT/mTOR signaling pathway, a major growth, survival, and migration pathway [16, 18, 19]. Beyond this canonical PTEN function, there is a growing body of research exploring the protein phosphatase and non-catalytic activities of PTEN [20, 21]. The subcellular localization of PTEN and its importance to neurological phenotypes is of special interest since very little is known about PTEN function with respect to regulating these processes. However, recent work suggests changes in Pten subcellular localization (i.e., cytoplasmic predominance) may be important to neuronal and glial functions and may be associated more often with ASD phenotypes [22-24]. Moreover, it has been observed that missense mutation versus other types of mutation is enriched among individuals with ASD [25-28]. However, there are still outstanding questions about the exact impact of PTEN localization on neurological structure and function. There is a growing need to study and characterize PTEN mutations that affect PTEN localization and develop an understanding of how PTEN localization affects organismal phenotypes.In order to interrogate the effects of PTEN mislocalization, we developed two complementary mouse models of germline Pten mutation that either simulates or copies PHTS genotypes. One model exhibits cytoplasmic-predominant localization of Pten, the Pten model, while the other exhibits nuclear-enriched localization of Pten, the Pten model. In the cytoplasmic-predominant model, we found no significant morphological or behavioral changes in Pten mice, but in the homozygous Pten mice we observed dramatic macrocephaly and a sex-dependent increase in sociability with severe deficits in motor coordination [22]. Additionally, we performed extensive cellular phenotyping on the Pten model, finding hypertrophy of neuronal somas, astrogliosis, dysmyelination, stunted maturation of neural stem cells (NSCs), precocious differentiation of oligodendrocyte progenitor cells (OPCs), and microgliosis, specifically cell-autonomous microglial activation and increased phagocytic response [22, 25, 29–31]. Our molecular characterization of the Pten model included an RNA sequencing experiment that found that the neural transcriptome included many genes relevant to human idiopathic ASD, many of which were microglia-specific and associated with complement and neuroinflammatory pathways [23]. In contrast to the cytoplasmic-predominant model, the nuclear-predominant Pten mutant has never been characterized or subject to study. The Y68H mutation was initially observed in individuals with PTEN-ASD and favors nuclear localization of Pten [32, 33]. We suspect the mutation’s effect on Pten subcellular localization likely results in neurodevelopmental deficits, which may contribute the pathophysiology similar to that of PTEN-ASD. Therefore, we hypothesize that the nuclear-predominant Pten mutation contributes to cellular deficiencies in the function of neurons and glia, associating with behavioral changes reminiscent of ASD. Here, we provide a broad characterization of Pten mouse evaluating behavioral, cellular, and molecular phenotypes.
Methods
Animals
We generated Pten mice on a C57BL/6 J (Jackson Laboratory, Bar Harbor, Milwaukee) background by introducing one missense mutation into exon three of the mouse Pten gene, specifically Pten c.202 T>C, via standard cre-lox methodology (Fig. 1a). This mutation targets the sequence analogous to the ATP-binding motif B found in human PTEN [32, 33]. Male Pten mice on a C57BL/6J background (backcrossed for > 10 generations) were bred with female Pten+ mice on a C57BL/6 J background newly ordered from Jackson Laboratory. Genotyping was performed on genomic DNA from clipped toes per the Jackson Laboratory protocol using modified PCR primers: Y68H F1, 5′-GTTTCACAGCTGGTTGGAAGG -3′, and Y68H R1, 5′-TGTACCCAGCTCACAGACTTCC-3′. Mice were maintained on a 14:10 light/dark cycle with access to food and water ad libitum. The room temperature was maintained between 18 and 26 °C. Animals were euthanized via CO2 asphyxiation followed by cervical dislocation. All experiments were conducted under protocols approved by the Institutional Animal Care and Use Committee (IACUC) at Cleveland Clinic. Additionally, for all experiments described, we utilized both male and female mice for our experiments.
Fig. 1
Characterization of gross morphological and Pten localization phenotypes in Pten mice. a Visualization of single missense mutation in exon 3 of mouse Pten c.202 T > C, converting tyrosine (Y) residue 68 into histidine (H), which served to generate the germline Pten mouse model. b Nuclear-cytoplasmic fractionation performed on Pten+ and Pten mouse cortical tissue and visualized via Western blot, targeting Pten as well as Hsp90 (cytoplasmic), and Lamin A/C (nuclear) to demonstrate fraction purity. N = 4. c Quantification of nuclear-cytoplasmic Pten ratio from Western blot in panel b (Median∆N/CRatio = 0.20, 97% CI: 0.14–0.34, P = 0.029). d Immunofluorescence staining of mouse cortex, visualizing Pten (red), and DAPI (blue) in neurons of Pten+ and Ptenmice. e Quantification of panel d (Median∆ = 0.22; 97% CI: 0.089–0.48; P = 0.079). f Representative gross anatomical image, showing brain volume and morphology of Pten+ and Ptenmice. g Quantification of total brain mass and body weight in grams (g) of Pten+and Pten (medianΔBrainMass = 0.15, 97% CI: 0.090–0.21, P < 0.0001). h Analysis of downstream Pten signaling in Pten cortex by Western blot. N = 8. i Quantification of Pten expression data from panel h (P < 0.0002). j Quantification of P-Akt levels from panel h (P < 0.0002). k Quantification of P-S6 expression data from panel h (P = 0.50). l Quantification of P-Erk1/2 expression data from panel h (P = 0.16)
Characterization of gross morphological and Pten localization phenotypes in Pten mice. a Visualization of single missense mutation in exon 3 of mouse Pten c.202 T > C, converting tyrosine (Y) residue 68 into histidine (H), which served to generate the germline Pten mouse model. b Nuclear-cytoplasmic fractionation performed on Pten+ and Pten mouse cortical tissue and visualized via Western blot, targeting Pten as well as Hsp90 (cytoplasmic), and Lamin A/C (nuclear) to demonstrate fraction purity. N = 4. c Quantification of nuclear-cytoplasmic Pten ratio from Western blot in panel b (Median∆N/CRatio = 0.20, 97% CI: 0.14–0.34, P = 0.029). d Immunofluorescence staining of mouse cortex, visualizing Pten (red), and DAPI (blue) in neurons of Pten+ and Ptenmice. e Quantification of panel d (Median∆ = 0.22; 97% CI: 0.089–0.48; P = 0.079). f Representative gross anatomical image, showing brain volume and morphology of Pten+ and Ptenmice. g Quantification of total brain mass and body weight in grams (g) of Pten+and Pten (medianΔBrainMass = 0.15, 97% CI: 0.090–0.21, P < 0.0001). h Analysis of downstream Pten signaling in Pten cortex by Western blot. N = 8. i Quantification of Pten expression data from panel h (P < 0.0002). j Quantification of P-Akt levels from panel h (P < 0.0002). k Quantification of P-S6 expression data from panel h (P = 0.50). l Quantification of P-Erk1/2 expression data from panel h (P = 0.16)
Western blot analysis
Cortical regions of the brain were isolated, snap-frozen, and stored at − 80 °C. Tissue was thawed on ice and lysed in RIPA buffer (10 mM Tris–Cl [pH 8], 1 mM EDTA, 0.5 mM EGTA, 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, 140 mM NaCl), containing phosphatase inhibitor #2 (Sigma, St. Louis, Missouri, #P5726-5ML), phosphatase inhibitor #3 (Sigma, #P0044-5ML), and protease inhibitor (Sigma, #P8345-5ML). Lysates were quantified for protein concentration using bicinchoninic acid assay (BCA) assay, equalized to a concentration of 1 μg/μl of protein per sample, and finally 20 μg of protein was loaded to a 4–15% gradient polyacrylamide gel for SDS-PAGE separation. The separated proteins were transferred to a nitrocellulose membrane and blocked overnight at 4 °C in 3% bovine serum albumin (BSA) in 1X Tris-buffered saline, containing 0.2% Tween-20 (TBST). Membranes were then washed with TBST and incubated with experiment-specific primary antibodies diluted in bovine serum albumin (BSA) overnight at 4 °C. The following antibodies were used: PTEN (1:5000, #ABM-2025, Cascade Bioscience, Winchester, Massachusetts), IBA1 (1:500, #019-19741, Wako, Bellwood, Virginia), MBP (1:1000, MAB386, EMD Millipore, Burlington, Massachusetts), PLP (1:1000, ab28486, Abcam, Cambridge, Massachusetts), GAPDH (1:5000, 2118L, Cell Signaling, Danvers, Massachusetts), HSP90 (1:1000, 4874, Cell Signaling), Lamin A/C (1:1000, 2032, Cell Signaling), Beta-actin (1:5000, AM4302, Thermo-Fisher, Waltham, Massachusetts), phospho-AKT Ser473 (1:1000, 9271, Cell Signaling), AKT (1:1000, 4691, Cell Signaling), phospho-ERK1/2 (1:1000, 9101, Cell Signaling), ERK1/2 (1:1000, 9102, Cell Signaling), phosph-S6 (1:1000, 4858S, Cell Signaling), and C1q (1:500, ab71940, Abcam). We removed the primary antibody solution and performed three washes, 10 min per wash, with TBST. Blots were probed with goat anti-mouse secondary antibody IRDye800 (1:20,000, #213965, LI-COR, Lincoln, Nebraska) or goat anti-rabbit IRDye680 (1:20,000, #213971, LI-COR) diluted in BSA, for 2 h at room temperature. The membranes were washed three times, 10 min each in TBST, and imaged using the Odyssey CLx imaging system (LI-COR). Using ImageJ (National Institute of Health, Bethesda, Maryland, 1995), we performed densitometry analysis on these images to quantify protein expression.
Gene expression analysis by qRT-PCR
Total RNA was extracted from Pten+ and Pten flash frozen cortex using the RNeasy Plus kit (RNeasy Plus kit, # 74136, Qiagen, Germantown, MD) and cDNA synthesis using Maxima First Strand cDNA Synthesis Kit for RT-qPCR (Maxima First Strand cDNA Synthesis Kit for RT-qPCR, #K1642, Thermo-Fisher) according to supplier protocols. We designed primers using UCSC Genome browser mouse GRCm39/mm39 mouse (https://genome.ucsc.edu/) assembly to select exonic regions of interest and selected primers according to standard Primer3 version 0.4.0 (https://bioinfo.ut.ee/primer3-0.4.0/) protocol to select our qRT-PCR primers. qRT-PCR was performed using Power SYBR Green Master Mix (SYBR Green Master Mix, # 4367660, Thermo-Fisher) following standard protocol to prepare samples in a 96-well plate (Fisherbrand 96-Well Semi-Skirted PCR Plates, #14230244, Fisher Scientific, Waltham, MA) and run on QuantStudio™ 3 Real-Time PCR System (QuantStudio™ 3 Real-Time PCR System, # A28567, Thermo-Fisher) as a standard run with cycling program of 10 min at 95 °C followed by 40 cycles of 95 °C for 15 s and 60 °C for 60 s. Primer sequences used and designed for mouse are listed in Additional file 1: Table S1.
Behavior testing
To assess changes in social behavior, we employed the three-chamber sociability test according to a previously reported protocol [22, 34]. Mice were placed in a center chamber for five minutes and then returned to their original cage. Next, the assessment consisted of a 10-min trial, where the test mouse was returned to the central chamber and given a choice between two identical containers, one chamber containing a mouse, and the other an empty chamber. In order to measure preference for social novelty, the 10-min trial was repeated on the same day later with a familiar mouse in one chamber and a novel mouse in the other. Time spent in each chamber and time spent in close contact with the containers were recorded and quantified using Noldus EthoVision software (Wageningen, Netherlands).To assess repetitive behavior, we administered the marble burying test to our mice per a previously published protocol [35]. This trial is performed by placing 20 marbles atop clean bedding material and placing the trial mouse into the case for a 30-min session. Upon completion of the trial the number of buried and non-buried marbles was scored.The open field test was conducted to assess a mouse’s decision to enter or travel through the center of an arena based on the premise that mice experience anxiety in exposed spaces. Tracking software Noldus EthoVision XT (Wageningen, Netherlands) was used to establish set zones in an open field box measuring 48 × 48 × 48 cm (L × W × H) with the center zone measuring 15 × 15 cm. Mice were placed into the center of the box and their location and overall velocity recorded for 10 min using Noldus EthoVision XT (Wageningen, Netherlands). Post-assay mice were placed back into their home cage, and the open field box was cleaned with trifectant. These data were then analyzed to determine the amount of time and frequency the mice entered the center zone of the open field box.The accelerating rotarod is used to assess sensorimotor coordination and motor learning in rodent models. This was a two-day task in which mice are placed onto a non-rotating rod (3 cm in diameter) and divided into 6 sections that allows 6 mice to be tested at the same time without being able to see each other. The rod is 46 cm above a platform. Each mouse received 4 trials per day with an inter-trial interval of at least 10 min to prevent their performance from being impaired by fatigue. For each trial mice were placed onto the rod and allowed to balance themselves. When all mice were balanced on the rod, rod rotation was initiated and slowly accelerated from 4 to 40 revolutions per-minute (rpm) over a 5-min period. Latency to stay on the rod was assessed using an infrared beam below the rod that when triggered would record a mouse’s latency to fall. After the 4 trials were completed, mice were returned to their home cage and the floor and rod were cleaned with trifectant. Each mouse received a total of 8 trials over a two-day period (4 trial/day with and intertrial interval of at least 10 min).Additionally, to determine whether there was altered communication of mutant mice, we recorded ultrasonic vocalizations (USVs) of pups isolated from their mothers and litter mates. On postnatal day 4 (P4) mice are labeled with a black marker for identification on their backs and separated from mother and littermates. Separated pups were placed into a clean weigh-boat inside a sound-attenuating Styrofoam box from which USVs were recorded with ultrasound microphone Avisoft UltraSoundGate condenser microphone capsule CM16, Avisoft Bioacoustics (Glienicke/Nordbahn, Germany) for 5 min. After the recording pups were returned to their dam and litter, the number of calls was counted and analyzed using Avisoft SASLab Pro software (Glienicke/Nordbahn, Germany). This test was conducted as a blinded study, and mouse genotype was unknown until P8 post toe clip and genotyping.
Primary microglia cell culture
Mixed glia were obtained by trypsinization of postnatal day 2 (P2) cortices followed by plating on poly-d-lysine-coated T-75 culture flasks. Mixed glia cultures were maintained in DMEM (Lerner Research Institute Media Core, Cleveland, OH) with 10% FBS and 1% Penicillin and Streptomycin (Pen/Strep). Once the mixed glia cultures reached confluency at approximately DIV 10, they were agitated for 1 h at 125 RPM. At this point, the supernatant was removed and spun down at 1200 RMP in order to isolate primary microglia. Isolated microglia were resuspended in DMEM with 10% FBS and 1% Pen/Strep and seeded on poly-d-lysine-coated glass cover slips subsequently used for immunofluorescence staining and phagocytic assays at DIV 3 post-shaking.
Phagocytosis assay
We plated primary microglia at a density of 1 × 105 in a 12-well dish with PDL-coated coverslips for 48 h in a 37 °C cell incubator with 5% CO2 and 100% humidity. Next, we blocked 1-μm fluorescent beads (Sigma-Aldrich, #L1030) in FBS for 1 h at 37 °C at a ratio of 1:5 v/v. Florescent beads were diluted with DMEM to reach a final concentration of 0.01% (v/v). Microglial culture media were replaced with 250 μl DMEM containing beads and incubated for 1 h at 37 °C in a cell incubator. Cultures were washed thoroughly five times with ice-cold PBS (Lerner Research Institute Media Core) and fixed in ice-cold methanol prior to immunofluorescent staining for IBA1 (1:500, #019-19741, Wako).
Immunofluorescence staining of brain tissue
Mice were euthanized and perfused with approximately 50 ml of 1X PBS. Brain tissue was then extracted and fixed in 4% PFA (pH = 7) for 24 h at 4 °C. Brains were then washed three times with PBS and cryoprotected in 30% sucrose dissolved in PBS for 94 h at 4 °C. Frozen brain sections were cut coronally to a width 10 μm on a cryostat and mounted on polarized glass slides (Fisherbrand Superfrost Plus microscope slides, #12-550-15, Fisher Scientific). OCT was removed by washing slides in PBS for 10 min, and tissue was permeabilized with 3% Triton-X dissolved in PBS for 10 min. Slides were next washed three times for five minutes each in PBS and probed with experiment-specific primary antibodies: IBA1 (1:500, #019-19741, Wako), PLP (1:1000, ab28486, Abcam), NeuN (1:250, MAB377, EMD Millipore), OLIG2 (1:250, ab9610, Abcam), S100B (1:200, ab52642, Abcam), GFAP (1:250, sc-33673, Santa Cruz), OXT (1:250, ab212193, Abcam), PTEN (1:5000, #ABM-2025, Cascade Bioscience) and incubated overnight at 4 °C. The following day, slides were washed with PBS for three times five minutes each. This was followed by incubation with secondary antibody for 2 h: goat anti-mouse Alexa Fluor 568 (1:2000, #A11031, Thermo-Fisher) and goat anti-rabbit Alexa Fluor 488 (1:2000, #A11008, Thermo-Fisher). Post incubation, slides were washed and mounted in Vectashield medium with DAPI (Vector Laboratories, Burlingame, CA), coverslipped, and sealed with nail polish.
In vitro immunofluorescence staining
We cultured primary microglia on poly-D-lysine (PDL)-coated cover slips until DIV 14. Microglia were washed with ice-cold PBS and fixed in ice-cold methanol for two minutes. This was followed by three washes for five minutes each with ice-cold PBS. We then permeabilized the microglia with 0.03% Triton X-100 dissolved in PBS for four minutes. Next, cells were blocked with 10% normal goat serum for 1 h at room temperature, followed by incubation with primary antibody IBA1 (1:500, #019-19741, Wako), CX3CR1 (1:250, #14-6093-81, Thermo-Fisher) TREM2 (1:250, #76765S, Cell Signaling) diluted in 10% normal goat serum in PBS. Cells were then incubated in primary antibody overnight at 4 °C. The following day cells were washed with PBS three times for five minutes and secondary was added, goat anti-mouse Alexa Fluor 568 secondary antibody (1:2000, #A11031, Thermo-Fisher) diluted in 10% normal goat serum in PBS. The cells were incubated in secondary antibody for 2 h at room temperature, washed with PBS three times for five minutes, and coverslipped with Vectashield medium with DAPI (Vector Laboratories).
Immunofluorescence quantification
We captured images of brain sections and primary microglia as confocal images using a Leica TCS-SP8-AOBS inverted confocal microscope (Leica Microsystems, GmbH, Wetzlar, Germany). Brain sections and microglia cultures were imaged with a minimum of N = 3 biological replicates. ImageJ software was used to measure area and intensity of the stain and calculated integrated density of brain images. Additionally, ImageJ was used to measure area of stain per microglia in vivo to assess morphological changes.
Transcriptomic data analysis
We isolated total RNA from the cortex of eight Pten mice and seven Pten+ mice. Aliquots of roughly 60 ng/μL total RNA (average RIN score = 9.1; Additional file 1: Table S2) were prepared (TruSeq Stranded Total RNA—RiboZero Gold, Illumina, San Diego, CA) and then sequenced using an Illumina NOVA-Seq. The resulting Fastq sequences were subject to standard processing and quality control (QC) evaluation, using MultiQC v1.9 (https://multiqc.info/). Then, we performed an alignment to the mouse reference genome (mm10) using Spliced Transcripts Alignment to a Reference (STAR) 2.7.5 (https://github.com/alexdobin/STAR) [36-38] and repeated a quality control evaluation using MultiQC v1.9. One Pten+ sample and three Pten samples were discarded due to a high proportion of repetitive sequences and generally poor alignment statistics (Additional file 1: Fig S1). Additionally, we used Salmon 1.8.0 (https://bioconductor.org/packages/release/workflows/html/rnaseqDTU.html) as an alternative method to count reads mapping to a present index of known cDNA transcripts. Subsequently, we performed DeSeq2 1.28.1 on STAR-aligned counts and Salmon-produced counts to assess differential expression (DE). These two methods were used to ensure concordance between both approaches. Genes experiencing DE were analyzed in RStudio 1.2.5001 using R 4.0.0 to construct volcano plots and heatmaps. Generally, a p value (P < 0.05), fold change (Log2(Fold Change) ≥ 1.0 or (Log2(Fold Change) ≤ − 1.0), and count (RPKM > 10) thresholds were used for these analyses. In order to assess the biological impact of the DE results, we used STRING (https://string-db.org/) and Ingenuity Pathway Analysis (Qiagen, Redwood City, California) software.
Glial transcriptomic analysis with NanoString panel
To supplement our cortical total RNA sequencing and gain some greater insight into glia-specific molecular profiles, we utilized NanoString nCounter® Glial Profiling Panel (https://www.nanostring.com/products/ncounter-assays-panels/neuroscience/glial-profiling/) on P40 cortical RNA extracted from Pten and Pten+ littermate controls equal parts male and female (N = 8), and then quantified differential expression. This approach reports on nearly 800 glial-related genes. NanoString is a direct multiplexed method that measures gene expression using color-coded probes. The original descriptive methods for this approach are found in Geiss et al., 2008 [39].
Statistical analysis
We analyzed normally distributed data using a one-way analysis of variance (ANOVA) or Student’s t test, where appropriate (GraphPad Prism 8). After performing a one-way ANOVA (F), we performed a post hoc Tukey–Kramer analysis. When data were not normally distributed, we performed nonparametric analyses including Mann–Whitney U and Kruskal–Wallis tests (H), where appropriate (GraphPad Prism 8). P values that are less than 0.05 were considered statistically significant.
Results
mice exhibit increased nuclear Pten localization and increased brain mass
We originally observed the PTEN mutation in PHTS individuals diagnosed with ASD and found that this particular mutation was sufficient to disrupt the subcellular partitioning of PTEN resulting in relatively predominant nuclear localization [33]. Furthermore, we generated the Pten mouse model by introducing a single missense mutation into exon three of mouse Pten (i.e., Pten c.202 T > C), thus converting tyrosine residue 68 into histidine (Fig. 1a). To assess the subcellular localization of Pten in our Pten mouse, we performed nuclear-cytoplasmic fractionation of cortical tissue and assessed protein localization via Western blot (Fig. 1b). We observed decreased Pten in the cytoplasmic fraction of Pten hemibrain relative to Pten+ (N = 4 mouse/genotype, Fig. 1b). Additionally, quantitative assessment showed that the ratio of nuclear-to-cytoplasmic Pten is increased in the Pten mice compared to Pten+ (Median∆N/CRatio = 0.20; 97% CI: 0.15–0.34; P = 0.029; Fig. 1c). Next, we performed immunofluorescence staining for Pten in the brains of six-month-old Pten mice, which also shows predominantly nuclear localization of Pten (Median∆N/CRatio = 0.22; 97% CI: 0.089–0.48; P = 0.079; Fig. 1d, e). These observations are consistent with our Western data on subcellular fractionation (Fig. 1b), showing enrichment of nuclear Pten localization relative to cytoplasmic Pten in the Pten brain (Fig. 1d).Macrocephaly is a hallmark of PHTS individuals, and ASD in the context of germline PTEN mutation is always accompanied by macrocephaly [28, 40, 41]; therefore, to determine whether a similar overgrowth phenotype exists in Pten mice, we performed a gross examination of Pten brains at P40. We found a significant increase in brain mass as measured in grams in Pten mice compared to Pten+ littermate controls normalized to individual mouse body mass (MedianΔBrainMass/BodyMass = 0.24; 97% CI: 0.089–0.38; P < 0.001; Fig. 1f, g).
mice show decreased expression of Pten and increased phosphorylation of Akt
To evaluate overall Pten expression and downstream signaling in Pten mice, we performed Western blot analysis on cortical lysates isolated from Pten mice and Pten+ littermate controls at six weeks-of-age. We found a significant decreased in overall Pten expression in the cortical lysates of Pten mice (MedianΔPten = − 0.31; 95% CI: − 0.38 to − 0.23; P < 0.0002) (Fig. 1h, i). In addition, we blotted for the canonical downstream effectors of Pi3k/Akt/mTor signaling, finding significantly increased P-Akt levels in the cortices of Pten mice (MedianΔP-Akt/TotalAkt = − 0.38; 95% CI: 0.038–0.89; P < 0.0002) with no changes in P-S6 or P-Erk1/2 (Fig. 1h, j, k, l).
mutant mice exhibit behavioral deficits
Next, we sought to examine the possibility that nuclear-predominant Pten expression in the central nervous system (CNS) may alter social behavior. Several studies have demonstrated that Pten loss, whether constitutional or conditional to the CNS, can have deleterious consequences on social behavior, anxiety, learning, memory, and/or repetitive behavior, phenotypes that are associated with ASD in humans [15, 28]. In order to assess whether there were any changes in sociability at six-week-old Pten mice compared to Pten+ littermate controls, we employed the three-chamber test (Fig. 2a). We found that Pten mice spent less time in the chamber containing the social target than the empty chamber (P < 0.0001; N+/+ = 13; NY68H/+ = 10; Fig. 2b). Then, utilizing the same three-chamber test model, we assessed changes in preference for social novelty by placing a familiar mouse in one chamber and a novel social target in the other. We found a significant shift for Pten mice toward a reduced preference for a novel versus familiar social target compared to Pten+ littermate controls (P < 0.0001; N+/+ = 13; NY68H/+ = 10; Fig. 2c). In order to assess repetitive behavior, since it is defined as one of the two core behavioral domains of ASD [42], we performed the marble burying test with six-week-old Pten mice. We found that the cages of Pten mice had more marbles buried compared to Pten+ controls (MedianΔMarbles = 4.68; 97% CI: 2.12–7.23; P = 0.002) and increased displacement of the marbles from their original positions compared to the cages of wildtype mice as assessed by visual inspection (Fig. 2d, e). The social deficits observed in Pten mice roughly align with the DSM-V behavioral domains for ASD diagnosis: social impairment and restrictive and repetitive interests or behaviors.
Fig. 2
Behavioral phenotyping of Pten mice. a Schematic of the experimental design for the three-chamber sociability and social novelty tests as they were performed on six-week-old Pten+ and Pten mice. b Quantification of the three-chamber sociability test, showing time spent in empty chamber or in chamber containing the social target (P < 0.0001; N+/+ = 13; NY68H/+ = 10). c Quantification of the three-chamber social novelty test performed with six-week-old Pten+ and Pten mice, showing time spent in chamber containing familiar or novel social target (P < 0.0001; N+/+ = 13; NY68H/+ = 10). d Representative image of marble burring test results for Pten+ and Pten mice. e Quantification of marble burying test, showing mean marbles buried between Pten+ and Pten mice (MedianΔMarbles = 4.68; 97% CI: 2.12–7.23; P = 0.002). f From open field test (N = 6), the amount of time (s) mice spent in center of field (P = 0.65). g Time in intermediate zone (s) assessed by open field test (P = 0.078). h Time in thigmotaxis (s) as assessed by open field test (P = 0.018). i Total distance traveled during open field testing (P = 0.16). j mean velocity of mice during open field testing (P = 0.26). k Rotarod testing experiment (N = 8; Pgenotype = 0.90; Plearning = 0.01). l Ultrasonic vocalization testing (N = 4; P = 0.057). Datapoints are colored by mouse sex. Males in blue. Females in red. P value key: *P < 0.05, **P < 0.01, ****P < 0.0001
Behavioral phenotyping of Pten mice. a Schematic of the experimental design for the three-chamber sociability and social novelty tests as they were performed on six-week-old Pten+ and Pten mice. b Quantification of the three-chamber sociability test, showing time spent in empty chamber or in chamber containing the social target (P < 0.0001; N+/+ = 13; NY68H/+ = 10). c Quantification of the three-chamber social novelty test performed with six-week-old Pten+ and Pten mice, showing time spent in chamber containing familiar or novel social target (P < 0.0001; N+/+ = 13; NY68H/+ = 10). d Representative image of marble burring test results for Pten+ and Pten mice. e Quantification of marble burying test, showing mean marbles buried between Pten+ and Pten mice (MedianΔMarbles = 4.68; 97% CI: 2.12–7.23; P = 0.002). f From open field test (N = 6), the amount of time (s) mice spent in center of field (P = 0.65). g Time in intermediate zone (s) assessed by open field test (P = 0.078). h Time in thigmotaxis (s) as assessed by open field test (P = 0.018). i Total distance traveled during open field testing (P = 0.16). j mean velocity of mice during open field testing (P = 0.26). k Rotarod testing experiment (N = 8; Pgenotype = 0.90; Plearning = 0.01). l Ultrasonic vocalization testing (N = 4; P = 0.057). Datapoints are colored by mouse sex. Males in blue. Females in red. P value key: *P < 0.05, **P < 0.01, ****P < 0.0001To expand our behavioral phenotyping and assess anxiety in our model, we performed open field testing. The open field test helps determine whether Pten mice have altered interests in exploration and the extent they experience anxiety. We found no significant changes in time spent in the center, and intermediate zone of the open field arena (Fig. 2f, g); however, we did find that Pten mice preferred to travel and stay along the walls of the open field arena, which indicates increased thigmotaxis (MedianΔ = 44.6; 97% CI: 7.97–73.7; P = 0.018; Fig. 2h). Increased thigmotaxis is a potential indicator of anxiety. Further analysis of the Pten total distance traveled and velocity did not show any significant differences compared to Pten+ mice, but there was a trend toward decreased distance traveled and exploratory movement in Pten mice relative to controls (Fig. 2i, j). The open field test suggests that Pten mice may experience more anxiety than their wildtype counterparts.We also sought to assess motor coordination and neuromuscular learning via rotarod testing. We found no difference in latency to fall between Pten and Pten+ mice, and both sets of mice improved their latency to fall upon successive testing but also showed no significant differences in motor learning (Fig. 2k). It appears there are not deficits in motor coordination in Pten mice. The lack of motor coordination deficit lends support to the validity of the social deficits observed in the 3-chamber and open field tests.To learn more about the social behavioral deficits in Pten mice, we assessed the ultrasonic vocalizations (USVs) of Pten pups separated from their mothers to determine whether there were any changes in call frequency. We found a near-significant trend toward an increase in call frequency from Pten pups separated from mothers compared to littermate controls (P = 0.057), suggesting greater anxiety in Pten mice (Fig. 2l). All together these behavioral data demonstrate that Pten mice exhibit decreased sociability, decreased interest in social novelty, increased repetitive behavior, and increased indices of anxiety. This appears largely consistent with autism-like phenotypes.
Microglial activation and increased expression of complement and neuroinflammatory proteins in the brains of mice
It has already been well established that disrupted Pten expression in mice can lead to increased cellular proliferation, white matter abnormality, astrogliosis, and microglial activation in vivo [15, 22, 29, 30]. Therefore, we sought to determine whether there were any clear cellular pathologies in the brains of Pten mice, using immunofluorescence staining, qRT-PCR, and Western blotting for markers specific to neurons, oligodendrocytes, astrocytes, and microglia. To our surprise we did not observe any significant abnormalities in gross white matter nor in the populations of oligodendrocytes, astrocytes, or neurons with respect to proliferation or activity the brains of six-month-old Pten mice (Additional file 1: Fig S2A-H); however, there was a trend showing a slight decline in cell populations of oligodendrocytes and astrocytes in Pten mice compared to Pten+ controls (Additional file 1: Fig S2B-D). Given the advanced age of these mice relative to our other timepoints, we felt it was unlikely there were glial pathologies at an earlier timepoint. We confirmed this by assessing the glial population at P40 too (Additional file 1: Fig S3).During our comprehensive cellular phenotyping of the cortex of six-month-old Pten mice, we noticed a pattern of microglial activation. Thus, we sought to repeat this observation at our earlier six-week timepoint given that our behavioral data are obtained there. We stained microglia for Iba1 in the cortex of P40 Pten mice and observed increased Iba1-positive cells and morphological changes indicative of microglial activation, such as increased cell area and Iba1 expression (Fig. 3a, b). We quantified the cell area of individual microglia in Pten in vivo and found a significant increase in the cell area of these microglia (Mean∆CellArea = 0.22; 95% CI: 0.04–0.28; P = 0.007; Fig. 3b). Moreover, we measured the integrated density of the Iba1 stain and found it to be significantly increased in Pten compared to Pten+ microglia (Mean∆IntDensity = 0.33; 95% CI: 0.19–0.45; P = 0.0001; Fig. 3c). Finally, to confirm these changes were not the result of increased microglial number, we quantified the microglia numbers of mice assayed for microglia area and Iba1 expression (N = 5) and found no significant change in Pten mice compared to Pten+ (Fig. 3d).
Fig. 3
Evidence for a microglial pathology in the Pten cortex. a Representative immunofluorescence staining of six-week-old Pten+ and Pten cortical microglia with Iba1 (green) and DAPI (blue). N = 3. b Quantification of individual microglia area from data represented in panel a (P = 0.007) c Iba1 expression assessed from IF staining from panel a experiments (P = 0.001). d Total Iba1-positive cells normalized to total DAPI-positive cells from panel a experiments (P = 0.42). e–h Relative expression assessed on cortical tissue from six-week-old Pten+ and Pten mice (N = 7) via qRT-PCR for C1q (P = 0.04; e), Cx3cr1 (P = 0.003; f), Trem2 (P = 0.02; g), and Dap12 (P = 0.03; h). i-j Western analysis on cortical tissue from six-week-old Pten+ and Pten mice (N = 8) for C1q (P = 0.01; i), Cx3cr1 (P = 0.001: j), and Bdnf (P = 0.004; k). P value key: *P < 0.05, **P < 0.01, ***P < 0.001
Evidence for a microglial pathology in the Pten cortex. a Representative immunofluorescence staining of six-week-old Pten+ and Pten cortical microglia with Iba1 (green) and DAPI (blue). N = 3. b Quantification of individual microglia area from data represented in panel a (P = 0.007) c Iba1 expression assessed from IF staining from panel a experiments (P = 0.001). d Total Iba1-positive cells normalized to total DAPI-positive cells from panel a experiments (P = 0.42). e–h Relative expression assessed on cortical tissue from six-week-old Pten+ and Pten mice (N = 7) via qRT-PCR for C1q (P = 0.04; e), Cx3cr1 (P = 0.003; f), Trem2 (P = 0.02; g), and Dap12 (P = 0.03; h). i-j Western analysis on cortical tissue from six-week-old Pten+ and Pten mice (N = 8) for C1q (P = 0.01; i), Cx3cr1 (P = 0.001: j), and Bdnf (P = 0.004; k). P value key: *P < 0.05, **P < 0.01, ***P < 0.001Next, we sought to validate our earlier observations and determine whether there was increased expression of key complement and neurodegenerative genes in the cortex of P40 Pten mice using qRT-PCR. We found significantly increased expression in C1q (Mean∆RelativeExpression = 0.87; 95% CI: 0.05–1.70; P = 0.04; Fig. 3e), Cx3cr1 (Mean∆RelativeExpression = 0.44; 95% CI: 0.17–0.70; P = 0.003; Fig. 3f), Trem2 (Mean∆RelativeExpression = 0.37; 95% CI: 0.05–0.69; P = 0.02; Fig. 3g), and Dap12 (Mean∆RelativeExpression = 0.45; 95% CI: 0.04–0.86; P = 0.03; Fig. 3e). We did not see any significant changes in complement genes C3, C3ar1, Csf1r, and Itgam or genes essential for fractalkine and immune signaling such as Cx3cl1, Ccl2, Igf1, Adam10, Adam17, Tlr4, Il4, and Il10, excepting Itbg2 (Additional file 1: Fig. S4).Next, we examined protein expression of known microglia or neurotrophic makers: C1q, Cx3cr1, and Bdnf via Western blot. We found significantly increased expression of C1q (Mean∆Expression = 0.76; 95% CI: 0.19–1.38; P = 0.01; Fig. 3i), Cx3cr1 (Mean∆Expression = 3.4; 95% CI: 0.72–3.87; P = 0.001; Fig. 3j), and Bdnf (Mean∆Expression = -0.24; 95% CI: − 0.04 to − 0.09; P = 0.004; Fig. 3e). These data suggest not only that microglia are activated and have a pro-inflammatory molecular signature, but also that they may participate in increase phagocytosis given the increased expression of complement. Together, these data indicate that the Pten mutation appears to leave astrocyte and oligodendrocyte populations unaffected, while contributing to a microglial pathology in vivo. This phenotype is also stable throughout the early and later life of the model.
Primary microglia express increased C1q and exhibit increased phagocytic ability in vitro
To evaluate the cellular origins (i.e., cell autonomous or cell non-autonomous) of the observed microglia pathology, we cultured primary microglia isolated from Pten and Pten+ mice. We found Pten expression to be significantly decreased overall in Pten microglia compared to Pten+ microglia (Mean∆Expression = -0.42; 95% CI: − 0.55 to − 0.26; P = 0.0006; Fig. 4a, b) with significantly increased expression in Iba1 (Mean∆Expression = 0.25; 95% CI: 0.04–0.89; P = 0.038; Fig. 4a, C) and C1q (Mean∆Expression = 0.74; 95% CI: 0.36–1.55; P = 0.004; Fig. 4a, d). However, we did not see a statistically significant increase in Trem2 or Cx3cr1 as we did in vivo (Fig. 4a, e, f). This suggests the dysregulation of Iba1 and C1q may be of cell autonomous origins, while dysregulation of Trem2 and Cx3cr1 may require some stimuli or interaction.
Fig. 4
In vitro validation of Pten microglia pathology. a Representative immunofluorescence staining of Pten+ and Pten primary microglia with Pten (red), Iba1 (red), C1q (green), Trem2 (green), Cx3cr1 (green), and DAPI (blue). N = 7. b-e Quantification of IF staining in panel a for Pten (P = 0.0006; b), Iba1 (P = 0.038; c), C1q (P = 0.004; d), Trem2 (P = NS; e), and Cx3cr1 (P = NS; f). g Representative image of phagocytosis assay comparing Pten+ and Pten microglia. h Quantification of panel g for proportion of active phagocytic microglia over total microglia. P = 0.01 i Quantification of panel g of average bead counts per phagocytic microglia. P = 0.005. P value key: *P < 0.05, **P < 0.01, ***P < 0.001
In vitro validation of Pten microglia pathology. a Representative immunofluorescence staining of Pten+ and Pten primary microglia with Pten (red), Iba1 (red), C1q (green), Trem2 (green), Cx3cr1 (green), and DAPI (blue). N = 7. b-e Quantification of IF staining in panel a for Pten (P = 0.0006; b), Iba1 (P = 0.038; c), C1q (P = 0.004; d), Trem2 (P = NS; e), and Cx3cr1 (P = NS; f). g Representative image of phagocytosis assay comparing Pten+ and Pten microglia. h Quantification of panel g for proportion of active phagocytic microglia over total microglia. P = 0.01 i Quantification of panel g of average bead counts per phagocytic microglia. P = 0.005. P value key: *P < 0.05, **P < 0.01, ***P < 0.001To assess the phagocytosis activity of cultured Pten microglia, we performed a phagocytosis assay and found the total number of Pten phagocytic microglia was significantly higher than the number of phagocytic microglia isolated from Pten+ littermate controls (MeanΔPhagocyticAbility = 0.16; 95% CI: 0.040–0.27; P = 0.01; Fig. 4g, h). In addition, phagocytic Pten microglia were able to engulf more fluorescent beads compared to Pten+ littermate controls (MeanΔPhagocyticEfficiency = 3.2; 95% CI: 2.5–4.0; P = 0.005; Fig. 4g, i). These data demonstrate that Pten microglia are likely subject to largely cell autonomous mechanisms of dysregulation. The lesion in Pten provokes aberrant microglial activation and increases in engulfment activity, which may have effects on the synaptic architecture of the Pten brain.
Transcriptomic characterization of the cortex
Given the surprising lack of disruption of canonical signaling downstream of Pten in the context of the striking behavioral and cellular findings, we performed a transcriptomic survey of the cortex of young adult (six-week-old or P40), male mice (N+/+ = 6; NY68H/+ = 5). RNA-sequencing analysis of cortical RNA identified 332 differentially expressed genes (threshold: P < 0.05; Log2(Fold Change) ≥ 1.0 or Log2(Fold Change) ≤ -1.0; Additional file 2), which are summarized in a volcano plot (Fig. 5a). The volcano plot also illustrates askew toward overexpression with relatively fewer under expressed genes being observed. Moreover, the changes in gene expression are visualized in a heatmap (threshold: P < 0.001), showing a clear separation between genotypes with a general pattern of increased expression in the heterozygous mutant and decreased expression in the wildtype (Fig. 5b).
Fig. 5
Transcriptomic survey of Pten cortex identifies broad changes in expression, affecting PTEN signaling and neurological processes, including oxytocin overexpression. a Volcano plot highlighting genes showing highly significant changes in differential expression (DE) in red (P < 0.0001; NWT = 6; NY68H = 5). b Heatmap of DE genes (threshold: P < 0.001) clustered by column (i.e., by expression pattern within a gene). c Top “Canonical Pathways” identified by Ingenuity Pathway Analysis (IPA) from DE gene list input. d Top identified IPA network from input DE gene list. The network is organized hierarchically. Red = overexpression; green = underexpression; solid line = direct relationship; hashed line = indirect relationship; arrow direction = direction of relationship. e STRING analysis of subnetwork of DE genes displaying the relationship between overexpressed Oxt and other DE genes (i.e., interactome). Node size trends with degree connectivity. Node color trends with betweenness centrality (i.e., cooler colors indicated higher betweenness centrality). Thickness of edge trends with the confidence in the biological relationship. f An oxytocin regulatory network constructed using IPA’s Grow and Molecule Activity Predictor (MAP) tools. Blue = predicted inactivation; orange = predicted activation; solid line = direct relationship; hashed line = indirect relationship; arrow direction = direction of relationship
Transcriptomic survey of Pten cortex identifies broad changes in expression, affecting PTEN signaling and neurological processes, including oxytocin overexpression. a Volcano plot highlighting genes showing highly significant changes in differential expression (DE) in red (P < 0.0001; NWT = 6; NY68H = 5). b Heatmap of DE genes (threshold: P < 0.001) clustered by column (i.e., by expression pattern within a gene). c Top “Canonical Pathways” identified by Ingenuity Pathway Analysis (IPA) from DE gene list input. d Top identified IPA network from input DE gene list. The network is organized hierarchically. Red = overexpression; green = underexpression; solid line = direct relationship; hashed line = indirect relationship; arrow direction = direction of relationship. e STRING analysis of subnetwork of DE genes displaying the relationship between overexpressed Oxt and other DE genes (i.e., interactome). Node size trends with degree connectivity. Node color trends with betweenness centrality (i.e., cooler colors indicated higher betweenness centrality). Thickness of edge trends with the confidence in the biological relationship. f An oxytocin regulatory network constructed using IPA’s Grow and Molecule Activity Predictor (MAP) tools. Blue = predicted inactivation; orange = predicted activation; solid line = direct relationship; hashed line = indirect relationship; arrow direction = direction of relationshipTo gain insight into the biology affected by the expression changes observed in the Pten cortex, we performed Ingenuity Pathway Analysis (IPA), which identified the top “canonical pathways” that show enrichment beyond random chance based on the input gene list, i.e., the genes showing differential expression (threshold: P < 0.05; Log2(Fold Change) ≥ 1.0 or Log2(Fold Change) ≤ -1.0). The top ten pathways are all related to cellular stress and inflammation signaling (Fig. 5c). This signature is driven by the differential expression of Card10, Il1r1, Ngfr, Tcf7l2, and Ttr, where Il1r1, the interleukin 1 receptor type 1 gene, appears in the associated lists of 90% of the pathways (Fig. 5c). The top network showing how the differentially expressed molecules are biologically related implicates Tcf7l2 as an important regulatory node given that it has the highest degree centrality (i.e., 12) in the network (Fig. 5d). Furthermore, using STRING analysis, an important gene–gene association network was identified from among the differentially expressed genes, implicating oxytocinergic signaling. Differential expression analysis found a roughly fivefold increase in oxytocin (Oxt), and network analysis of associated genes showing DE found a small network where Oxt has the highest degree and betweenness centrality (Fig. 5e; Additional file 2).To expand our transcriptomic analysis of the Pten cortex, we utilized a NanoString nCounter® Glial Profiling Panel comparing Pten and Pten+ mice (N = 8). We found that the expression of glial-related genes as assessed by the NanoString panel was consistent with our RNA sequencing experiments and our cellular phenotyping on microglial. We again found that C1q, Iba1, Cx3cr1, and Csf1r were upregulated in the Pten cortex (Additional file 1: Fig. S5a). In subjecting the differentially expressed genes to IPA pathway analysis, we found the enriched pathways associated with neuroinflammation, autophagy, phagosome maturation, and complement signaling significantly increased in expression in Pten (Additional file 1: Fig. S5b). Subsequent network analysis also implicated other genes known to be dysregulated, Dap12 and Trem2 were also implicated in the network of complement and neuroinflammatory genes dysregulated in the Pten (Additional file 1: Fig. S5c). This more specified analysis of gene expression provided supporting validation of our observation of microglial activation and the generalized neuroinflammatory signature in the neural transcriptome.
Increased Oxytocin expression in paraventricular neurons in hypothalamus
Given the importance of oxytocin signaling to social behavior, we sought to understand more about the possible biological effects of increased expression of Oxt. Thus, we deployed IPA’s Molecule Activity Predictor (MAP) to understand how the fivefold increase in Oxt may affect downstream interactors. From the top 10 molecules directly downstream of Oxt, we found that increased Oxt expression predicts an increase in dopamine, calcium, Prkcz, and Egfr activity and a decrease in Crh and Fos activity (Fig. 5f). Finally, we sought to confirm the increase in Oxt expression in the brain of Pten mice so we performed immunofluorescence staining for Oxt in P40 hypothalamus. By visual inspection alone, we found a dramatic increase in Oxt expression in the paraventricular neurons (PVN) of the hypothalamus of P40 Pten mice (N = 5; Fig. 6a). In addition, we plotted the average global expression of Oxt per biological replicate to show these data were not skewed (MedianΔ = 0.98; 97% CI: 0.063–1.86; P = 0.032; Fig. 6b). To validate the increased hypothalamic Oxt expression, we performed Western analysis. This confirmed Oxt overexpression in the PVN of Pten mice (MedianΔ = 5.8; 97% CI: 4.4–7.0; P = 0.0079; Fig. 6c, d). Given these data, nuclear-predominant Pten, Pten, associates with increased Oxt expression in the brain.
Fig. 6
Overexpression of oxytocin in paraventricular nucleus (PVN) of the hypothalamus of six-week-old Pten+ and Pten mice. a Representative immunofluorescence staining of six-week-old Pten+ and Pten PVN for Oxt (green) and DAPI (blue). N = 3. Magnification = 10X. Scale bar = 166 μm. b Quantification of the integrated density of Oxt stain per biological replicate, finding a significant increase in Oxt in the Pten PVN compared to Pten+ PVN (P = 0.032). c Western analysis for Oxt expression in of six-week-old Pten+ and Pten hypothalamus (N = 5). d Quantification of Western in panel c (P = 0.0079). P value key: *P < 0.05, **P < 0.01
Overexpression of oxytocin in paraventricular nucleus (PVN) of the hypothalamus of six-week-old Pten+ and Pten mice. a Representative immunofluorescence staining of six-week-old Pten+ and Pten PVN for Oxt (green) and DAPI (blue). N = 3. Magnification = 10X. Scale bar = 166 μm. b Quantification of the integrated density of Oxt stain per biological replicate, finding a significant increase in Oxt in the Pten PVN compared to Pten+ PVN (P = 0.032). c Western analysis for Oxt expression in of six-week-old Pten+ and Pten hypothalamus (N = 5). d Quantification of Western in panel c (P = 0.0079). P value key: *P < 0.05, **P < 0.01
Discussion
In this study, we demonstrate that the nuclear-predominant Pten mutation in mice results in decreased sociability, decreased interest in novel social stimuli, increased perseverative behavior, likely increased anxiety, increased microglial activation, increased expression of neuroinflammatory genes, and increased neural oxytocin levels. We show that in addition to deficits in social behavior (Fig. 2), Pten mice have macrocephaly from increased brain mass, and this is associated with nuclear enrichment of Pten, decreased Pten expression, and increased phosphorylation of Akt (Fig. 1). Moreover, we show that Pten microglia are activated in vivo, expressing elevated amounts microglial, inflammatory, and neurotrophic markers, including C1q (Fig. 3). We investigated the cellular origins of the microglial pathology finding that it appears to arise cell autonomously and also enhances phagocytic activity (Fig. 4). To understand the molecular landscape undergirding these cellular and behavioral pathologies, we performed a transcriptomic survey of the cortex of Pten mice identifying broad changes in gene expression much of which implicates neuroinflammatory or other neurological pathways, including the striking finding of increased oxytocin expression (Fig. 5). The oxytocin expression finding was confirmed at the protein level via staining and Western analysis of the hypothalamus (Fig. 6). Together these data implicate Pten localization and expression as an important regulator of behavior, microglia activation and phagocytosis, neuroinflammatory genes expression and the oxytocin system.Murine models of increasing specificity have established that Pten and related downstream signaling participate in the regulation of social behavior, CNS morphology, and neuronal and glial function [22, 24, 44–65]. Consistent behavioral phenotypes of altered social behavior persist when loss of Pten expression is restricted to mature neurons or neuronal precursors, and these models often have impaired learning/memory, increased anxiety, and/or altered activity/motor ability [15, 44, 46, 48]. These behavioral abnormalities contrast somewhat with those observed in our germline Pten, cytoplasmic-predominant Pten mislocalization model [22]. Pten mice maintain relatively normal capacities for learning and memory, while showing a sex-specific (i.e., male) increase in sociability but severely impaired motor coordination; motor coordination deficits occur in male and female Pten mice [15, 22]. Pten mice show decreased sociability and interest in social novelty with increased repetitive behavior and possible anxiety. It is difficult to assert confidently the sources of variability in the behavioral phenotypes observed in these various Pten mouse models; however, the Pten and Pten models are distinct from Pten knock-out or conditional knock-out models in that the mutations are designed to disrupt Pten localization instead of completely eliminating all Pten expression and thus functionality. Of course, these same missense models are still complicated by the frequent protein instability and increased proteasomal degradation associated with many missense mutations [43].The Pten and Pten mutations simulate or copy mutations observed in PTEN-ASD individuals, respectively. In terms of the behavioral differences between the Pten and Pten models, it is also difficult to confidently attribute certain behaviors to Pten localization partially because both mutations disrupt Pten stability and phosphatase activity to some extent; for instance, we know that the Pten mutation has a very damaging effect on the stability of Pten [43]. In fact, we have shown decreased Pten expression over time in both our models [22, 30]. However, it is worth noting that the cytoplasmic versus nuclear localization models appear to associate with contrasting effects on sociability, indicating a clear possibility that subcellular localization effects may be important. It is likely that additional models and elegantly designed experiments will be needed to accurately and robustly associate Pten localization changes with specific behavioral changes in mice.Beyond the behavioral phenotypes, our contrasting Pten models do reveal something about the effects of Pten localization on glial phenotypes. The Pten mouse has aggressive oligodendrocyte and astrocyte pathologies, including increased myelination [22, 29], whereas the Pten mouse has no apparent oligodendrocyte or astrocyte pathologies (Additional file 1: Fig S2A-H). However, both the Pten and Pten mice have activated microglia with enhanced phagocytic activity. Comparatively, these findings suggest that the localization affects glial phenotypes, where less nuclear Pten provokes oligodendrocyte and astrocyte pathologies. On the other hand, localization appears to not have an effect on the behavior of microglia; rather, the total steady-state level of Pten appears to regulate microglia function. Both the Pten and Pten mutations disrupt Pten stability and both have activated microglia, a pathology shown to be of cell autonomous origins. Glia development and function appear to be tied closely to various aspects of Pten activity, presenting a likely fruitful area of future study.Possibly the most surprising and important finding of this study is the observation of increased oxytocin expression in the Pten brain, which occurs in a model with clear behavioral abnormalities. A wealth of research, including extensive animal modeling, demonstrates persuasively that the oxytocin system is important to prosocial cognition [62]. In fact, research has shown that oxytocin may be a viable therapeutic modality for ameliorating social deficits in individuals with ASD [62-65]. Interestingly, many of the models referenced above (e.g., Oxt knockouts) have deficits in the oxytocin system where mice either have lower circulating Oxt or an inability to respond to exogenous Oxt due to knockout (i.e., oxytocin receptor knockout). Our molecular phenotype for oxytocin is quite the opposite. This may seem paradoxical that a mouse with behavioral deficits has an elevated amount of a prosocial neuropeptide. However, it has been shown that high exogenous doses of oxytocin can paradoxically provoke an anxiogenic response due to the excess oxytocin, after oxytocin receptor (OXTR) saturation, acting on vasopressin receptors [64-67]. Moreover, it has also been observed in other models, such as the BTBR mouse, that increased oxytocin expression and social deficits (i.e., increased anxiety) can co-occur [68]. Alternatively, it is possible that Pten mice are somehow insensitive to Oxt (despite normal Oxtr expression) and thus the increased Oxt is a compensatory response. Regardless of the molecular etiology, we believe that the increased Oxt expression observed in the RNA-sequencing experiment (Fig. 5) and confirmed in the PVN (Fig. 6) is likely relevant to some of the behavioral abnormalities observed in the Pten mouse. This is important as this is the first time the oxytocin system has be observed as perturbed in a Pten model. Disruption of the oxytocin system may be specific to only a subset of Pten mutations, such as those that cause nuclear mislocalization. More research is required to sort out whether oxytocin system problems are common to all Pten models or only to a specific subset of mutations.
Limitations
The strengths of our study are founded on the specificity of the mouse modeling (i.e., a knockin mutation identical to that observed in PTEN-ASD individuals) and the rigorous behavioral, cellular, and molecular phenotyping. However, there are limitations to our Pten model, such as the deleterious effect of the Y68H mutation on the stability and overall steady-state level of Pten [33, 42]. The decreased stability of Pten makes it difficult to absolutely attribute causality of any phenotype to the localization changes observed. Moreover, the localization changes themselves are not absolute either. As clearly shown in Fig. 1b, c, the change in localization is relative, and there is still plenty Pten in the cytoplasm; However, the extent to which the cytoplasmic Pten is of wildtype or mutant providence is unknown as the germline nature of the model since the Pten genotype exhibits embryonic lethality, therefore requiring the study of only heterozygous mutants. It is unclear whether the Y68H mutation can function as a dominant-negative mutant as has been described for other PTEN missense mutations [69], but there is some existing evidence to suggest that it does not function as such [27, 42, 70]. Future work designed to specifically interrogate questions about the functional effects of Pten localization on social and neurobiological phenotypes will have to utilize more extensive modeling strategies. Additionally, the phenotyping of this model, especially behaviorally, can always be expanded upon for a deeper and more nuanced understanding of the behavior deficits; however, our work at least makes clear significant deficits exist. However, the Pten model is extremely useful for gaining important insights into these challenging and important scientific questions about pathophysiology, which should help inform monogenic ASD risk cases.
Conclusion
Although there, of course, remains much to explore about the Pten mouse and other Pten models, especially in terms of the effects on social cognition and neurobiology, this study is an important step toward understanding how Pten localization in the brain can affect social cognition and neuronal and glial function. Until this study, it was unclear whether decreased cytoplasmic expression of Pten would affect the CNS in such a dramatic fashion. Our work on the Pten mouse demonstrates that social behavior can be modulated by mutations that shift Pten to the cytoplasm or nucleus, but the exact social phenotypes can be quite distinct. Contrastingly, certain glial phenotypes seem to be in part dependent on Pten localization as the Pten mouse shows no apparent changes in oligodendrocytes and astrocytes (Additional file 1: Fig S2), whereas its complement, the Pten model, show aggressive glial pathologies [22, 29]. However, microglial dysfunction seems to be entirely independent of Pten localization, instead resulting from decreased Pten expression levels in general. In addition, we find prominent oxytocin overexpression in the hypothalamus of Pten mice, thus linking Pten mutation and the oxytocin system for the first time. In sum, this study demonstrates the importance of nuclear Pten to CNS morphology and function, while linking Pten, a prominent ASD risk gene, to a neuroendocrine modulator of social behavior, oxytocin, in a murine model with clear social deficits.Additional file 1. contains QC information on the transcriptomic study, glia phenotyping data, NanoString experimental data, and qRT PCR validation of selected RNA-Seq hits.Additional file 2. contains the raw differential expression data from transcriptomic surgery of P40 Y68H cortex.
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