| Literature DB >> 34086411 |
Tasmia Ahmed1, S M Abdur Rahman1, Muhammad Asaduzzaman1, Abul Bashar Mir Md Khademul Islam2, A K Azad Chowdhury1.
Abstract
Antiprotozoal drug nitazoxanide (NTZ) has shown diverse pharmacological properties and has appeared in several clinical trials. Herein we present the synthesis, characterization, in vitro biological investigation, and in silico study of four hetero aryl amide analogs of NTZ. Among the synthesized molecules, compound 2 and compound 4 exhibited promising antibacterial activity against Escherichia coli (E. coli), superior to that displayed by the parent drug nitazoxanide as revealed from the in vitro antibacterial assay. Compound 2 displayed zone of inhibition of 20 mm, twice as large as the parent drug NTZ (10 mm) in their least concentration (12.5 µg/ml). Compound 1 also showed antibacterial effect similar to that of nitazoxanide. The analogs were also tested for in vitro cytotoxic activity by employing cell counting kit-8 (CCK-8) assay technique in HeLa cell line, and compound 2 was identified as a potential anticancer agent having IC50 value of 172 µg which proves it to be more potent than nitazoxanide (IC50 = 428 µg). Furthermore, the compounds were subjected to molecular docking study against various bacterial and cancer signaling proteins. The in vitro test results corroborated with the in silico docking study as compound 2 and compound 4 had comparatively stronger binding affinity against the proteins and showed a higher docking score than nitazoxanide toward human mitogen-activated protein kinase (MAPK9) and fatty acid biosynthesis enzyme (FabH) of E. coli. Moreover, the docking study demonstrated dihydrofolate reductase (DHFR) and thymidylate synthase (TS) as probable new targets for nitazoxanide and its synthetic analogs. Overall, the study suggests that nitazoxanide and its analogs can be a potential lead compound in the drug development.Entities:
Keywords: zzm321990E. colizzm321990; DHFR; MAPK9; TS; cytotoxicity assay; nitazoxanide
Mesh:
Substances:
Year: 2021 PMID: 34086411 PMCID: PMC8177060 DOI: 10.1002/prp2.800
Source DB: PubMed Journal: Pharmacol Res Perspect ISSN: 2052-1707
FIGURE 1Structure of NTZ and heteroaryl analogs
Synthesis of heteroaryl amide derivatives as NTZ analogues
Antibacterial activity assay against Escherichia coli and Staphylococcus aureus in differential concentration
| Test samples | Zone of inhibition (mm) | |||||||
|---|---|---|---|---|---|---|---|---|
| Concentration (μg/ml) | ||||||||
| 100 | 50 | 25 | 12.5 | 100 | 50 | 25 | 12.5 | |
|
|
| |||||||
| 1 | 15 | 14 | 14 | 6 | 10 | 6 | 6 | 6 |
| 2 | 22 | 21 | 20 | 20 | 6 | 6 | 6 | 6 |
| 3 | 14 | 10 | 6 | 6 | 12 | 9 | 6 | 6 |
| 4 | 16 | 13 | 13 | 13 | 6 | 6 | 6 | 6 |
| NTZ | 15 | 12 | 12 | 10 | 6 | 6 | 6 | 6 |
Nalidixic acid (30 μg/disc): 20 mm in E. coli and 19 mm in S. aureu.
Trypan blue dye exclusion test to determine the percentage of cell viability
| Compound | Concentration μg/ml | Live cell count | % cell viability |
|---|---|---|---|
| Control | – | 2 × 104 | 100% |
| DMSO | – | 19 × 103 | >95% |
| 1 | 20 | 19 × 103 | >95% |
| 100 | 19 × 103 | >95% | |
| 500 | 12 × 103–14 × 103 | 60%–70% | |
| 2 | 20 | 19 × 103 | >95% |
| 100 | 11 × 103–12 × 103 | 50%–60% | |
| 500 | 6 × 103–8 × 103 | 30%–40% | |
| 3 | 20 | 19 × 103 | >95% |
| 100 | 19 × 103 | >95% | |
| 500 | 19 × 103 | >95%% | |
| 4 | 20 | 19 × 103 | >95% |
| 100 | 19 × 103 | >95% | |
| 500 | 9 × 103–11 × 103 | 45%–55% | |
| NTZ | 20 | 19 × 103 | >95% |
| 100 | 18 × 103 | 92% | |
| 500 | 8 × 103–10 × 103 | 40%–50% |
Cytotoxicity of the synthesized compounds
| Name of the sample | Concentration (µg/ml) | Mean absorbance at 570 nm | % cell viability | % growth inhibition | IC50 μg |
|---|---|---|---|---|---|
| Blank (DMSO and Media) | — | 0.0515 | — | — | — |
| Control (Cells with DMSO) | 0 | 0.4445 | 100 | 0 | — |
| Compound | 500 | 0.1860 | 34.23 | 65.77 | 172 |
| 100 | 0.2615 | 53.44 | 46.56 | ||
| Compound | 500 | 0.2460 | 49.50 | 50.50 | 490 |
| 100 | 0.3275 | 70.23 | 29.77 | ||
| NTZ | 500 | 0.2126 | 41.01 | 58.99 | 428 |
| 100 | 0.4087 | 90.89 | 9.11 |
Result of molecular docking of the compounds against 14 target proteins
| Protein | PDB ID | Organism | UniProt ID | Active site | Affinity (kcal/mol) with | ||||
|---|---|---|---|---|---|---|---|---|---|
| NTZ | 1 | 2 | 3 | 4 | |||||
| PDH | 2IEA |
| — | Pocket prediction (whole) | −9.1 | −7.3 | −7.5 | −8.1 | −7.4 |
| PFOR | 2C42 |
| P94692 | 31T, 64E, 114R, 996N | −9 | −7 | −8.1 | −7.6 | −8.2 |
| G6PS | 2J6H |
| P17169 | 2C, 604K | −8.3 | −7.7 | −7.2 | −7.8 | −7.2 |
| MAPK8 | 3O17 |
| P45983 | 151D | −7.9 | −7.2 | −6.5 | −7.4 | −6.8 |
| MAPK9 | 3E7O |
| P45984 | 151D | −7 | −5.3 | −7.9 | −5.6 | −8.8 |
| MAPK10 | 4KKE |
| P53779 | 189D | −7.9 | −6.3 | −6.4 | −6.2 | −6.7 |
| DHFR | 4M6J |
| P00374 | NADPH binding site | −7.7 | −6.4 | −7.2 | −6.4 | −7.5 |
| GSTP1 | 17GS |
| P09211 | 8Y, 39W, 45K | −7.3 | −5.3 | −6.1 | −5.8 | −6.2 |
| TS | 4UP1 |
| P04818 | 195C | −7.1 | −5.9 | −5.9 | −6 | −6.3 |
| mTORC1 | 5H64 |
| P42345 | 2340H | −6.7 | −5.9 | −6 | −6 | −6.1 |
| FabH | 3IL9 |
| P0A6R0 | Pocket prediction (DogSiteScorer) | −5.2 | −4.7 | −5.7 | −5.2 | −6.3 |
FIGURE 2Binding Interaction of Synthesized analogs with PFOR. (A) Compound 2 and PFOR, (B) Compound 4 and PFOR
FIGURE 3Graphical representation of the interaction of NTZ (multicolor) and the synthesized compounds (multicolor) with the respective proteins (brown) obtained by docking study. (A) Binding mode of NTZ with active site of PDH. (B) Binding mode of Compound 3 with active site of PDH. (C) Binding mode of NTZ with active site of MAPK9. (D) Binding mode of Compound 4 with active site of MAPK9. (E) Binding mode of NTZ with active site of DHFR. (F) Binding mode of Compound 4 with active site of DHFR. (G) Binding mode of NTZ with active site of TS. (H) Binding mode of Compound 4 with active site of TS. Abbreviations: DHFR, Dihydrofolate reductase; MAPK9, Mitogen activated kinase 9; NTZ, Nitazoxanide; PDH, Pyruvate dehydrogenase; TS, Thymidylate synthase