Literature DB >> 34085217

Construction of a Full-Length 3'UTR Reporter System for Identification of Cell-Cycle Regulating MicroRNAs.

Dominika Kaźmierczak1, Per Hydbring2.   

Abstract

Three prime untranslated region (3'UTR) reporter constructs are widely used by the scientific community to functionally link microRNAs (miRNAs) to suppression of mRNA expression. However, full-length 3'UTR vectors are rarely employed due to labor-intensive cloning work. Instead, 3'UTR fragments containing putative miRNA binding sites are commonly utilized to mechanistically validate miRNAs. Assaying truncated 3'UTRs may falsely validate miRNAs due to altered positioning of binding sites in respect to 3'UTR length and RNA secondary structure. Here we present a detailed protocol for the construction of full-length 3'UTR luciferase reporter constructs that was used to unveil miRNAs regulating multiple cell-cycle factors.

Entities:  

Keywords:  3′UTR; Dual-luciferase vector; G418 selection; Genomic DNA; Nested PCR; Restriction enzyme digestion; U2OS cells

Mesh:

Substances:

Year:  2021        PMID: 34085217     DOI: 10.1007/978-1-0716-1538-6_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

1.  Specificity of microRNA target selection in translational repression.

Authors:  John G Doench; Phillip A Sharp
Journal:  Genes Dev       Date:  2004-03-10       Impact factor: 11.361

2.  A biochemical approach to identifying microRNA targets.

Authors:  Fedor V Karginov; Cecilia Conaco; Zhenyu Xuan; Bryan H Schmidt; Joel S Parker; Gail Mandel; Gregory J Hannon
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-27       Impact factor: 11.205

3.  Widespread changes in protein synthesis induced by microRNAs.

Authors:  Matthias Selbach; Björn Schwanhäusser; Nadine Thierfelder; Zhuo Fang; Raya Khanin; Nikolaus Rajewsky
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

4.  Cell-Cycle-Targeting MicroRNAs as Therapeutic Tools against Refractory Cancers.

Authors:  Per Hydbring; Yinan Wang; Anne Fassl; Xiaoting Li; Veronica Matia; Tobias Otto; Yoon Jong Choi; Katharine E Sweeney; Jan M Suski; Hao Yin; Roman L Bogorad; Shom Goel; Haluk Yuzugullu; Kevin J Kauffman; Junghoon Yang; Chong Jin; Yingxiang Li; Davide Floris; Richard Swanson; Kimmie Ng; Ewa Sicinska; Lars Anders; Jean J Zhao; Kornelia Polyak; Daniel G Anderson; Cheng Li; Piotr Sicinski
Journal:  Cancer Cell       Date:  2017-04-10       Impact factor: 31.743

5.  The impact of microRNAs on protein output.

Authors:  Daehyun Baek; Judit Villén; Chanseok Shin; Fernando D Camargo; Steven P Gygi; David P Bartel
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

6.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

Review 7.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

8.  Capture of microRNA-bound mRNAs identifies the tumor suppressor miR-34a as a regulator of growth factor signaling.

Authors:  Ashish Lal; Marshall P Thomas; Gabriel Altschuler; Francisco Navarro; Elizabeth O'Day; Xiao Ling Li; Carla Concepcion; Yoon-Chi Han; Jerome Thiery; Danielle K Rajani; Aaron Deutsch; Oliver Hofmann; Andrea Ventura; Winston Hide; Judy Lieberman
Journal:  PLoS Genet       Date:  2011-11-10       Impact factor: 5.917

9.  Identification of cell cycle-targeting microRNAs through genome-wide screens.

Authors:  Per Hydbring; Yinan Wang; Roman L Bogorad; Hao Yin; Daniel G Anderson; Cheng Li; Piotr Sicinski
Journal:  Cell Cycle       Date:  2017-11-14       Impact factor: 4.534

10.  Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Authors:  Sung Wook Chi; Julie B Zang; Aldo Mele; Robert B Darnell
Journal:  Nature       Date:  2009-06-17       Impact factor: 49.962

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