Literature DB >> 34080733

Estimation and construction of confidence intervals for biomarker cutoff-points under the shortest Euclidean distance from the ROC surface to the perfection corner.

Brian R Mosier1, Leonidas E Bantis1.   

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is an aggressive type of cancer with a 5-year survival rate of less than 5%. As in many other diseases, its diagnosis might involve progressive stages. It is common that in biomarker studies referring to PDAC, recruitment involves three groups: healthy individuals, patients that suffer from chronic pancreatitis, and PDAC patients. Early detection and accurate classification of the state of the disease are crucial for patients' successful treatment. ROC analysis is the most popular way to evaluate the performance of a biomarker and the Youden index is commonly employed for cutoff derivation. The so-called generalized Youden index has a drawback in the three-class case of not accommodating the full data set when estimating the optimal cutoffs. In this article, we explore the use of the Euclidean distance of the ROC to the perfection corner for the derivation of cutoffs in trichotomous settings. We construct an inferential framework that involves both parametric and nonparametric techniques. Our methods can accommodate the full information of a given data set and thus provide more accurate estimates in terms of the decision-making cutoffs compared with a Youden-based strategy. We evaluate our approaches through extensive simulations and illustrate them on a PDAC biomarker study.
© 2021 John Wiley & Sons Ltd.

Entities:  

Keywords:  3-class; Box-Cox; Euclidean distance; ROC; Youden index; cutoffs; kernels; perfection corner

Mesh:

Substances:

Year:  2021        PMID: 34080733      PMCID: PMC8571986          DOI: 10.1002/sim.9077

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.497


  20 in total

1.  Ordered multiple-class ROC analysis with continuous measurements.

Authors:  Christos T Nakas; Constantin T Yiannoutsos
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2.  The inconsistency of "optimal" cutpoints obtained using two criteria based on the receiver operating characteristic curve.

Authors:  Neil J Perkins; Enrique F Schisterman
Journal:  Am J Epidemiol       Date:  2006-01-12       Impact factor: 4.897

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Authors:  W J YOUDEN
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5.  Sequential Validation of Blood-Based Protein Biomarker Candidates for Early-Stage Pancreatic Cancer.

Authors:  Michela Capello; Leonidas E Bantis; Ghislaine Scelo; Yang Zhao; Peng Li; Dilsher S Dhillon; Nikul J Patel; Deepali L Kundnani; Hong Wang; James L Abbruzzese; Anirban Maitra; Margaret A Tempero; Randall Brand; Matthew A Firpo; Sean J Mulvihill; Matthew H Katz; Paul Brennan; Ziding Feng; Ayumu Taguchi; Samir M Hanash
Journal:  J Natl Cancer Inst       Date:  2017-04-01       Impact factor: 13.506

6.  Construction of confidence intervals for the maximum of the Youden index and the corresponding cutoff point of a continuous biomarker.

Authors:  Leonidas E Bantis; Christos T Nakas; Benjamin Reiser
Journal:  Biom J       Date:  2018-11-08       Impact factor: 2.207

7.  The robustness of the "binormal" assumptions used in fitting ROC curves.

Authors:  J A Hanley
Journal:  Med Decis Making       Date:  1988 Jul-Sep       Impact factor: 2.583

8.  Validation of biomarkers that complement CA19.9 in detecting early pancreatic cancer.

Authors:  Alison Chan; Ioannis Prassas; Apostolos Dimitromanolakis; Randall E Brand; Stefano Serra; Eleftherios P Diamandis; Ivan M Blasutig
Journal:  Clin Cancer Res       Date:  2014-09-19       Impact factor: 12.531

9.  Identification of serum biomarker signatures associated with pancreatic cancer.

Authors:  Christer Wingren; Anna Sandström; Ralf Segersvärd; Anders Carlsson; Roland Andersson; Matthias Löhr; Carl A K Borrebaeck
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

Review 10.  Pancreatic Ductal Adenocarcinoma: A Strong Imbalance of Good and Bad Immunological Cops in the Tumor Microenvironment.

Authors:  Etienne D Foucher; Clément Ghigo; Salem Chouaib; Jérôme Galon; Juan Iovanna; Daniel Olive
Journal:  Front Immunol       Date:  2018-05-14       Impact factor: 7.561

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  1 in total

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