| Literature DB >> 34079221 |
Shangshang Yu1, Qi Guo1, Tianqian Jia2, Xiaofei Zhang1, Dongyan Guo1, Yanzhuo Jia1, Jia Li1, Jing Sun1.
Abstract
PURPOSE: Acute myocardial infarction (AMI) is a cardiovascular disease with a high fatality rate. In this study, we combined network pharmacology and experimental pharmacology and discovered the potential mechanism of action and the active ingredients of the lily, Tricyrtis maculata was discovered. The monomer compound with stronger activity was discovered through in vitro cell experiments.Entities:
Keywords: GEO data mining; Tricyrtis maculata; experimental pharmacology; network pharmacology; nicotiflorin
Mesh:
Substances:
Year: 2021 PMID: 34079221 PMCID: PMC8164440 DOI: 10.2147/DDDT.S302617
Source DB: PubMed Journal: Drug Des Devel Ther ISSN: 1177-8881 Impact factor: 4.162
Figure 1Graphical abstract.
40 Known Chemical Compositions of T. maculata
| Numbering | Name | CAS Number | Reference |
|---|---|---|---|
| YD1 | 12α-hydroxyprogesterone | 19897-02-0 | [ |
| YD2 | 3-O-Methylquercetin | 1486-70-0 | [ |
| YD3 | N-benzoyl-L-phenylalaninol | 4503-96-2 | [ |
| YD4 | Sitostenone. | 1058-61-3 | [ |
| YD5 | β-Carotene | 7235-40-7 | [ |
| YD6 | Puerarin | 3681-99-0 | [ |
| YD7 | Catechol | 120-80-9 | [ |
| YD8 | 4-Methoxycinnamic acid | 830-09-1 | [ |
| YD9 | β-Sitosterol | 83-46-5 | [ |
| YD10 | Afzelin | 482-39-3 | [ |
| YD11 | Ferulic acid | 1135-24-6 | [ |
| YD12 | Methyl ferulate | 22329-76-6 | [ |
| YD13 | Stigmasterol | 83-48-7 | [ |
| YD14 | 4-Hydroxybenzoic acid | 99-96-7 | [ |
| YD15 | Quercetin | 117-39-5 | [ |
| YD16 | Sinapaldehyde | 20649-43-8 | [ |
| YD17 | Rutin | 153-18-4 | [ |
| YD18 | Kaempferol | 520-18-3 | [ |
| YD19 | Coniferyl aldehyde | 20649-42-7 | [ |
| YD20 | Pinoresinol | 487-36-5 | [ |
| YD21 | Nicotiflorin | 17650-84-9 | [ |
| YD22 | Indole-3-carboxaldehyde | 487-89-8 | [ |
| YD23 | Protocatechuic acid | 99-50-3 | [ |
| YD24 | Pregnenolone | 145-13-1 | [ |
| YD25 | Palmitic acid | 57-10-3 | [ |
| YD26 | R-(-)-3-Hydroxy-β-ionone | 15401-34-0 | [ |
| YD27 | Methylparaben | 99-76-3 | [ |
| YD28 | (S)-5—hydroxy-3,4-dimethyl | 6067-11-4 | [ |
| -5-pentylfuran-2(5H)-one | |||
| YD29 | Neoechinulin A | 51551-29-2 | [ |
| YD30 | 5,7,2ʹ,6ʹ-tetrahydroxy dihydro flavonoids | — | [ |
| YD31 | 5α-stigmastane-3β, 6β-diol | — | [ |
| YD32 | Triculata A | — | [ |
| YD33 | Trimethy-3,4-dehydrochebulate | — | [ |
| YD34 | Kaempferol-3-O-β-D-gluco | — | [ |
| side-7-O-α-L-rhamnoside | |||
| YD35 | Balanophonin B | — | [ |
| YD36 | Ash resin alcohol | — | [ |
| YD37 | Syringaresinol | — | [ |
| YD38 | Lichenene | — | [ |
| YD39 | 4ʹ-(1ʹ-propenoic methylester) phenoxyl caffeate | — | [ |
| YD40 | Trimacoside A | — | [ |
Notes: The abbreviation of the Latin name of Tricyrtis maculata is as follows: T. maculata.
Figure 2Results of GEO data mining. (A) Heat map of differential gene expression; (B) volcano map of differential gene expression.
Figure 3Results of network construction. (A) Venn diagram of component-disease intersection targets; (B) PPI network; (C) topological analysis results of PPI network; (D) results of “key components-core targets” network.
Figure 4Results of GO and KEGG enrichment analysis. (A) GO BP enrichment analysis of interselection targets; (B) GO CC enrichment analysis of interselection targets; (C) GO MF enrichment analysis of interselection targets; (D) KEGG enrichment analysis of interselection targets.
Docking Scores of Target Protein and Its Corresponding Compound
| Target | Compound | Score | Positive Drug | Score |
|---|---|---|---|---|
| MAPK3 | YD13 | 135.833 | Sulindac | 142.302 |
| STAT3 | YD6 | 102.054 | 16-tetraene-3-carboxamide | 89.0439 |
| TLR4 | YD20 | 94.7019 | Mifamurtide sodium hydrate | 21.6182 |
| MAPK1 | YD20 | 133.44 | Isoproterenol | 102.414 |
| MMP9 | YD21 | 135.835 | Minocycline | 122.449 |
Abbreviations: AMI, acute myocardial infarction; TCMSP, Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform; OMIM, Online Mendelian Inheritance in Man; PPI, protein–protein interaction; GO, Gene Ontology; BP, biological process; CC, cellular component; MF, molecular function; KEGG, Kyoto Encyclopedia of Genes and Genomes; NO, nitric oxide; AKT, protein kinase B; FoxO, forkhead box O; Bcl, B-cell lymphoma; TCM, Traditional Chinese Medicine; PDB, Protein Data Bank; CAS, Chemical Abstracts Service; HUVEC, human umbilical vein endothelial cell; FBS, fetal bovine serum; DMEM/F-12, Dulbecco’s modified Eagle’s medium/nutrient mixture F-12; CCK, cell counting kit; OD, optical density; MAPK, mitogen-activated protein kinase; pMCAO, permanent focal cerebral ischemia; eNOS, endothelial nitric oxide synthase; STAT, signal transducer and activator of transcription; TLR, toll-like receptors; MMP, matrix metalloproteinase; TNF-α, tumor necrosis factor alpha; SOD, superoxide dismutase; ROS, reactive oxygen species.
Figure 5Molecular docking results. (A) MAPK3 and YD13 molecular docking; (B) STAT3 and YD6 molecular docking; (C) TLR4 and YD20 molecular docking; (D) MAPK1 and YD20 molecular docking; (E) MMP9 and YD21 molecular docking.
Figure 6Results of the protective effect of nicotiflorin on TNF-α-induced HUVEC damage. (A) Inhibition rate of HUVEC growth by different concentrations of nicotiflorin; (B) effect of different concentrations of nicotiflorin on the growth inhibition rate of HUVEC cells induced by TNF-α; (C) comparison of NO level produced by nicotiflorin on TNF-α-induced HUVEC cells supernatant (*P <0.05) (n = 5).