Literature DB >> 34078993

Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients.

Margherita Mottola1,2, Alessandro Bevilacqua3,4, Stephan Ursprung5,6, Leonardo Rundo5,6, Lorena Escudero Sanchez5,6, Tobias Klatte7,8, Iosif Mendichovszky5, Grant D Stewart6,7, Evis Sala5,6.   

Abstract

Computed Tomography (CT) is widely used in oncology for morphological evaluation and diagnosis, commonly through visual assessments, often exploiting semi-automatic tools as well. Well-established automatic methods for quantitative imaging offer the opportunity to enrich the radiologist interpretation with a large number of radiomic features, which need to be highly reproducible to be used reliably in clinical practice. This study investigates feature reproducibility against noise, varying resolutions and segmentations (achieved by perturbing the regions of interest), in a CT dataset with heterogeneous voxel size of 98 renal cell carcinomas (RCCs) and 93 contralateral normal kidneys (CK). In particular, first order (FO) and second order texture features based on both 2D and 3D grey level co-occurrence matrices (GLCMs) were considered. Moreover, this study carries out a comparative analysis of three of the most commonly used interpolation methods, which need to be selected before any resampling procedure. Results showed that the Lanczos interpolation is the most effective at preserving original information in resampling, where the median slice resolution coupled with the native slice spacing allows the best reproducibility, with 94.6% and 87.7% of features, in RCC and CK, respectively. GLCMs show their maximum reproducibility when used at short distances.

Entities:  

Year:  2021        PMID: 34078993     DOI: 10.1038/s41598-021-90985-y

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  24 in total

Review 1.  Computer-aided diagnosis in medical imaging: historical review, current status and future potential.

Authors:  Kunio Doi
Journal:  Comput Med Imaging Graph       Date:  2007-03-08       Impact factor: 4.790

Review 2.  Radiomics as a Quantitative Imaging Biomarker: Practical Considerations and the Current Standpoint in Neuro-oncologic Studies.

Authors:  Ji Eun Park; Ho Sung Kim
Journal:  Nucl Med Mol Imaging       Date:  2018-02-01

3.  Reproducibility of CT Radiomic Features within the Same Patient: Influence of Radiation Dose and CT Reconstruction Settings.

Authors:  Mathias Meyer; James Ronald; Federica Vernuccio; Rendon C Nelson; Juan Carlos Ramirez-Giraldo; Justin Solomon; Bhavik N Patel; Ehsan Samei; Daniele Marin
Journal:  Radiology       Date:  2019-10-01       Impact factor: 11.105

4.  [Thrombopenic purpuras].

Authors:  G Tobelem
Journal:  Rev Prat       Date:  1981-02-01

5.  CT-based radiomic model predicts high grade of clear cell renal cell carcinoma.

Authors:  Jiule Ding; Zhaoyu Xing; Zhenxing Jiang; Jie Chen; Liang Pan; Jianguo Qiu; Wei Xing
Journal:  Eur J Radiol       Date:  2018-04-11       Impact factor: 3.528

6.  Robust Radiomics feature quantification using semiautomatic volumetric segmentation.

Authors:  Chintan Parmar; Emmanuel Rios Velazquez; Ralph Leijenaar; Mohammed Jermoumi; Sara Carvalho; Raymond H Mak; Sushmita Mitra; B Uma Shankar; Ron Kikinis; Benjamin Haibe-Kains; Philippe Lambin; Hugo J W L Aerts
Journal:  PLoS One       Date:  2014-07-15       Impact factor: 3.240

7.  Computational Challenges and Collaborative Projects in the NCI Quantitative Imaging Network.

Authors:  Keyvan Farahani; Jayashree Kalpathy-Cramer; Thomas L Chenevert; Daniel L Rubin; John J Sunderland; Robert J Nordstrom; John Buatti; Nola Hylton
Journal:  Tomography       Date:  2016-12

8.  Effect of tube current on computed tomography radiomic features.

Authors:  Dennis Mackin; Rachel Ger; Cristina Dodge; Xenia Fave; Pai-Chun Chi; Lifei Zhang; Jinzhong Yang; Steve Bache; Charles Dodge; A Kyle Jones; Laurence Court
Journal:  Sci Rep       Date:  2018-02-05       Impact factor: 4.379

Review 9.  Quantitative radiomics studies for tissue characterization: a review of technology and methodological procedures.

Authors:  Ruben T H M Larue; Gilles Defraene; Dirk De Ruysscher; Philippe Lambin; Wouter van Elmpt
Journal:  Br J Radiol       Date:  2016-12-12       Impact factor: 3.039

10.  Voxel size and gray level normalization of CT radiomic features in lung cancer.

Authors:  Muhammad Shafiq-Ul-Hassan; Kujtim Latifi; Geoffrey Zhang; Ghanim Ullah; Robert Gillies; Eduardo Moros
Journal:  Sci Rep       Date:  2018-07-12       Impact factor: 4.379

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  4 in total

1.  Pretreatment Computed Tomography-Based Machine Learning Models to Predict Outcomes in Hepatocellular Carcinoma Patients who Received Combined Treatment of Trans-Arterial Chemoembolization and Tyrosine Kinase Inhibitor.

Authors:  Qianqian Ren; Peng Zhu; Changde Li; Meijun Yan; Song Liu; Chuansheng Zheng; Xiangwen Xia
Journal:  Front Bioeng Biotechnol       Date:  2022-05-23

2.  Effect of Gray Value Discretization and Image Filtration on Texture Features of the Pancreas Derived from Magnetic Resonance Imaging at 3T.

Authors:  Bassam M Abunahel; Beau Pontre; Maxim S Petrov
Journal:  J Imaging       Date:  2022-08-18

3.  Building reliable radiomic models using image perturbation.

Authors:  Xinzhi Teng; Jiang Zhang; Alex Zwanenburg; Jiachen Sun; Yuhua Huang; Saikit Lam; Yuanpeng Zhang; Bing Li; Ta Zhou; Haonan Xiao; Chenyang Liu; Wen Li; Xinyang Han; Zongrui Ma; Tian Li; Jing Cai
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

4.  Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features.

Authors:  Mauro Castelli; Leonardo Rundo; Erick Costa de Farias; Christian di Noia; Changhee Han; Evis Sala
Journal:  Sci Rep       Date:  2021-11-01       Impact factor: 4.379

  4 in total

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