| Literature DB >> 34076796 |
Zhan Shi1, Xiumei Zhao1, Ying Su1, Chao Wang2, Ping Liu3, Hongyan Ge4.
Abstract
Glucocorticoid-induced cataract (GIC)-associated biomarkers were screened by ceRNA network construction. The GIC samples' GSE3040 were obtained from the NCBI-GEO database. R's Limma package was used to identify differentially expressed RNAs (DERs) between the normal and GIC samples group (4- and 16-h). The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways enrichment analysis for the mRNAs in the constructed GIC lncRNA-miRNA-mRNA ceRNA regulation network was implemented. A total of 1665 and 1443 DERs were obtained in the 4- and 16-h group, respectively. At two time points, 256 overlapping DERs were identified, of which 210 (17 lncRNAs and 203 mRNAs) had significant differential expression (4 down- and 206 up-regulated). A total of 534 co-expressed ligation pairs (all up-regulated) were obtained. A ceRNA regulation network was constructed. RPS6KA5, GAB1, CCR7, CCL2, COL4A4, and PPARG were obtained and significantly enriched in the 4 KEGG signaling pathways and were featured as GIC target molecules.Entities:
Keywords: CeRNA network; GIC; Target molecules
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Year: 2021 PMID: 34076796 DOI: 10.1007/s10528-021-10078-3
Source DB: PubMed Journal: Biochem Genet ISSN: 0006-2928 Impact factor: 1.890