Literature DB >> 34076593

FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.

Gustavo M A Lima1, Elmir Jagudin1, Vladimir O Talibov1, Laila S Benz2, Costantino Marullo1, Tatjana Barthel3, Jan Wollenhaupt3, Manfred S Weiss3, Uwe Mueller3.   

Abstract

Crystallographic fragment screening (CFS) has become one of the major techniques for screening compounds in the early stages of drug-discovery projects. Following the advances in automation and throughput at modern macromolecular crystallography beamlines, the bottleneck for CFS has shifted from collecting data to organizing and handling the analysis of such projects. The complexity that emerges from the use of multiple methods for processing and refinement and to search for ligands requires an equally sophisticated solution to summarize the output, allowing researchers to focus on the scientific questions instead of on software technicalities. FragMAXapp is the fragment-screening project-management tool designed to handle CFS projects at MAX IV Laboratory. It benefits from the powerful computing infrastructure of large-scale facilities and, as a web application, it is accessible from everywhere. open access.

Entities:  

Keywords:  drug discovery; fragment screening; fragment-based lead discovery; high-throughput data analysis; protein crystallography

Year:  2021        PMID: 34076593     DOI: 10.1107/S2059798321003818

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  4 in total

1.  Experiences From Developing Software for Large X-Ray Crystallography-Driven Protein-Ligand Studies.

Authors:  Nicholas M Pearce; Rachael Skyner; Tobias Krojer
Journal:  Front Mol Biosci       Date:  2022-04-11

2.  Identification of fragments binding to SARS-CoV-2 nsp10 reveals ligand-binding sites in conserved interfaces between nsp10 and nsp14/nsp16.

Authors:  Frank Kozielski; Céleste Sele; Vladimir O Talibov; Jiaqi Lou; Danni Dong; Qian Wang; Xinyue Shi; Maria Nyblom; Annika Rogstam; Tobias Krojer; Zoë Fisher; Wolfgang Knecht
Journal:  RSC Chem Biol       Date:  2021-10-06

3.  Fast fragment- and compound-screening pipeline at the Swiss Light Source.

Authors:  Jakub W Kaminski; Laura Vera; Dennis P Stegmann; Jonatan Vering; Deniz Eris; Kate M L Smith; Chia Ying Huang; Nathalie Meier; Julia Steuber; Meitian Wang; Günter Fritz; Justyna A Wojdyla; May E Sharpe
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-02-21       Impact factor: 7.652

Review 4.  A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.

Authors:  G D Noske; A M Nakamura; V O Gawriljuk; R S Fernandes; G M A Lima; H V D Rosa; H D Pereira; A C M Zeri; A F Z Nascimento; M C L C Freire; D Fearon; A Douangamath; F von Delft; G Oliva; A S Godoy
Journal:  J Mol Biol       Date:  2021-06-24       Impact factor: 6.151

  4 in total

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