| Literature DB >> 34073924 |
Stefania Zampieri1, Silvia Cattarossi1, Eleonora Pavan1, Antonio Barbato2, Agata Fiumara3, Paolo Peruzzo1, Maurizio Scarpa1, Giovanni Ciana1, Andrea Dardis1.
Abstract
Gaucher disease (GD) is an autosomal recessive lysosomal disorder due to beta-glucosidase gene (GBA) mutations. The molecular diagnosis of GD is complicated by the presence of recombinant alleles originating from a highly homologous pseudogene. Clinical exome sequencing (CES) is a rapid genetic approach for identifying disease-causing mutations. However, copy number variation and recombination events are poorly detected, and further investigations are required to avoid mis-genotyping. The aim of this work was to set-up an integrated strategy for GD patients genotyping using CES as a first-line test. Eight patients diagnosed with GD were analyzed by CES. Five patients were fully genotyped, while three were revealed to be homozygous for mutations that were not confirmed in the parents. Therefore, MLPA (multiplex ligation-dependent probe amplification) and specific long-range PCR were performed, and two recombinant alleles, one of them novel, and one large deletion were identified. Furthermore, an MLPA assay performed in one family resulted in the identification of an additional novel mutation (p.M124V) in a relative, in trans with the known p.N409S mutation. In conclusion, even though CES has become extensively used in clinical practice, our study emphasizes the importance of a comprehensive molecular strategy to provide proper GBA genotyping and genetic counseling.Entities:
Keywords: GBA; MLPA; clinical exome sequencing
Mesh:
Substances:
Year: 2021 PMID: 34073924 PMCID: PMC8197298 DOI: 10.3390/ijms22115538
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
GBA gene mutations identified in GD patients.
| Patient | Allele 1 | Allele 2 |
|---|---|---|
| GD#1 | c.1448T>C, p.L483P (L444P) | Total gene deletion |
| GD#2 | c.1226A>G, p.N409S (N370S) | AH006907.2:g.2094con10194 |
| GD#3 | c.1226A>G, p.N409S (N370S) | AH006907.2:g.1942_7319con100042_13806 |
| GD#4 | c.1049A>G, p.H350R (H311R) | c.1226A>G, p.N409S (N370S) |
| GD#5 | c.413delC, p.P138Lfs*62 (P99Lfs*62) | c.1226A>G, p.N409S (N370S) |
| GD#6 | c.1226A>G, p.N409S (N370S) | c.1448T>C, p.L483P (L444P) |
| GD#7 | c.475C>T, p.159W (R120W) | c.1226A>G, p.N409S (N370S) |
| GD#8 | c.508C>T, p.R170C (R131C) | c.1448T>C, p.L483P (L444P) |
GBA cDNA accession number NM_000157 (NP_000148). A novel mutation is indicated in red. The parentheses include traditional codon numbering beginning 39 codons downstream from the first ATG.
Figure 1MLPA analysis conducted on GD#1, GD#2, and GD#3 patients. (A–C) Normalized bar charts of GBA gene copy number patterns in GD patients (orange bars) and healthy control (blue bars). Data were normalized to those of healthy controls. (D–F) PCR amplicons of exon 1 to 5 and of exon 5 to 3′ untranslated region of GBA gene of patients GD#1 (D), GD#2 (E), and GD#3 (F). (G) Schematic representation of GBA long-range PCR amplicons. Exonic and intronic structures of the GBA gene are indicated by yellow boxes and grey lines, respectively. A forward primer (red arrow) specific to the GBA gene and an unspecific reverse primer (purple arrow) were used to selectively amplify the GBA gene and to avoid pseudogene contamination. * PCR amplification of recombinant allele.
Figure 2Co-segregation analysis performed by MLPA in GD#1 and GD#3’s family. (A,C) Normalized bar charts of GBA gene copy number patterns in the proband (orange bars), the mother (yellow bars) and the father (grey bars). Data were normalized to those of healthy controls (blue bars). (A) GD#1’s family co-segregation analysis. The black arrow indicates the absence of the peak corresponding to the GBA exon 10 probe in the proband. The father presented a half-reduced exon 10 relative peak height, while the mother displayed a half-reduced relative height of all GBA exons. (B) Family pedigree showing genotypes in GD#1. (C) GD#3’s family co-segregation analysis of the AH006907.2: g.2094con10194 recombinant allele. The black arrow indicates a half-reduced relative peak height corresponding to the GBA exon 4 probe in GD#3’s father. The mother presented a half-reduced relative height of exons 3 to 9. (D) Family pedigree showing genotypes in GD#3.
Figure 3Functional analysis of the novel p.M124V (M85V) missense mutation. (A) GCase activity in Hek293-GBA KO cells transiently transfected with the pCDNA3-GBA WT (WT) plasmid and pCDNA3 GBA M124V (M124V). Values are expressed as the percentage of wild-type activity and represent the mean ± SEM of three independent experiments. ** p < 0.001. pCDNA3 ALD was used as a negative control. (B) Western blot analysis of WT and mutant GBA protein expressed in Hek293-GBA KO cells.