Literature DB >> 34073778

Genome Editing to Generate Sake Yeast Strains with Eight Mutations That Confer Excellent Brewing Characteristics.

Tomoya Chadani1, Shinsuke Ohnuki1, Atsuko Isogai2, Tetsuya Goshima2, Mao Kashima1, Farzan Ghanegolmohammadi1, Tomoyuki Nishi3, Dai Hirata3,4,5, Daisuke Watanabe6, Katsuhiko Kitamoto7, Takeshi Akao2,5, Yoshikazu Ohya1,8.   

Abstract

Sake yeast is mostly diploid, so the introduction of recessive mutations to improve brewing characteristics requires considerable effort. To construct sake yeast with multiple excellent brewing characteristics, we used an evidence-based approach that exploits genome editing technology. Our breeding targeted the AWA1, CAR1, MDE1, and FAS2 genes. We introduced eight mutations into standard sake yeast to construct a non-foam-forming strain that makes sake without producing carcinogens or an unpleasant odor, while producing a sweet ginjo aroma. Small-scale fermentation tests showed that the desired sake could be brewed with our genome-edited strains. The existence of a few unexpected genetic perturbations introduced during breeding proved that genome editing technology is extremely effective for the serial breeding of sake yeast.

Entities:  

Keywords:  CAR1; CRISPR/Cas9; FAS2; MDE1; genome editing; sake yeast

Year:  2021        PMID: 34073778     DOI: 10.3390/cells10061299

Source DB:  PubMed          Journal:  Cells        ISSN: 2073-4409            Impact factor:   6.600


  25 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

3.  A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.

Authors:  Pablo Cingolani; Adrian Platts; Le Lily Wang; Melissa Coon; Tung Nguyen; Luan Wang; Susan J Land; Xiangyi Lu; Douglas M Ruden
Journal:  Fly (Austin)       Date:  2012 Apr-Jun       Impact factor: 2.160

4.  Genetic engineering of a sake yeast producing no urea by successive disruption of arginase gene.

Authors:  K Kitamoto; K Oda; K Gomi; K Takahashi
Journal:  Appl Environ Microbiol       Date:  1991-01       Impact factor: 4.792

5.  Contribution of 1,2-dihydroxy-5-(methylsulfinyl)pentan-3-one (DMTS-P1) to the formation of dimethyl trisulfide (DMTS) during the storage of Japanese sake.

Authors:  Atsuko Isogai; Ryoko Kanda; Yoshikazu Hiraga; Hiroshi Iwata; Shigetoshi Sudo
Journal:  J Agric Food Chem       Date:  2010-07-14       Impact factor: 5.279

6.  The construction and application of diploid sake yeast with a homozygous mutation in the FAS2 gene.

Authors:  Atsushi Kotaka; Hiroshi Sahara; Yoji Hata
Journal:  J Biosci Bioeng       Date:  2010-08-12       Impact factor: 2.894

Review 7.  Breeding research on sake yeasts in Japan: history, recent technological advances, and future perspectives.

Authors:  Hiroshi Kitagaki; Katsuhiko Kitamoto
Journal:  Annu Rev Food Sci Technol       Date:  2013

8.  Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair.

Authors:  Eirini M Kallimasioti-Pazi; Keerthi Thelakkad Chathoth; Gillian C Taylor; Alison Meynert; Tracy Ballinger; Martijn J E Kelder; Sébastien Lalevée; Ildem Sanli; Robert Feil; Andrew J Wood
Journal:  PLoS Biol       Date:  2018-12-12       Impact factor: 8.029

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

10.  Genome evolution across 1,011 Saccharomyces cerevisiae isolates.

Authors:  Jackson Peter; Matteo De Chiara; Anne Friedrich; Jia-Xing Yue; David Pflieger; Anders Bergström; Anastasie Sigwalt; Benjamin Barre; Kelle Freel; Agnès Llored; Corinne Cruaud; Karine Labadie; Jean-Marc Aury; Benjamin Istace; Kevin Lebrigand; Pascal Barbry; Stefan Engelen; Arnaud Lemainque; Patrick Wincker; Gianni Liti; Joseph Schacherer
Journal:  Nature       Date:  2018-04-11       Impact factor: 49.962

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  3 in total

1.  Defining Functions of Mannoproteins in Saccharomyces cerevisiae by High-Dimensional Morphological Phenotyping.

Authors:  Farzan Ghanegolmohammadi; Hiroki Okada; Yaxuan Liu; Kaori Itto-Nakama; Shinsuke Ohnuki; Anna Savchenko; Erfei Bi; Satoshi Yoshida; Yoshikazu Ohya
Journal:  J Fungi (Basel)       Date:  2021-09-17

2.  Quality Evaluation of Drinks Based on Liposome Shape Changes Induced by Flavor Molecules.

Authors:  Tsuyoshi Yoda
Journal:  ACS Omega       Date:  2022-02-08

3.  Assignment of unimodal probability distribution models for quantitative morphological phenotyping.

Authors:  Farzan Ghanegolmohammadi; Shinsuke Ohnuki; Yoshikazu Ohya
Journal:  BMC Biol       Date:  2022-03-31       Impact factor: 7.431

  3 in total

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