Literature DB >> 34073622

Propellanes as Rigid Scaffolds for the Stereodefined Attachment of σ-Pharmacophoric Structural Elements to Achieve σ Affinity.

Héctor Torres-Gómez1, Constantin Daniliuc2, Dirk Schepmann1, Erik Laurini3, Sabrina Pricl3,4, Bernhard Wünsch1,5.   

Abstract

Following the concept of conformationally restriction of ligands to achieve high receptor affinity, we exploited the propellane system as rigid scaffold allowing the stereodefined attachment of various substituents. Three types of ligands were designed, synthesized and pharmacologically evaluated as σ1 receptor ligands. Propellanes with (1) a 2-methoxy-5-methylphenylcarbamate group at the "left" five-membered ring and various amino groups on the "right" side; (2) benzylamino or analogous amino moieties on the "right" side and various substituents at the left five-membered ring and (3) various urea derivatives at one five-membered ring were investigated. The benzylamino substituted carbamate syn,syn-4a showed the highest σ1 affinity within the group of four stereoisomers emphasizing the importance of the stereochemistry. The cyclohexylmethylamine 18 without further substituents at the propellane scaffold revealed unexpectedly high σ1 affinity (Ki = 34 nM) confirming the relevance of the bioisosteric replacement of the benzylamino moiety by the cyclohexylmethylamino moiety. Reduction of the distance between the basic amino moiety and the "left" hydrophobic region by incorporation of the amino moiety into the propellane scaffold resulted in azapropellanes with particular high σ1 affinity. As shown for the propellanamine 18, removal of the carbamate moiety increased the σ1 affinity of 9a (Ki = 17 nM) considerably. Replacement of the basic amino moiety by H-bond forming urea did not lead to potent σ ligands. According to molecular dynamics simulations, both azapropellanes anti-5 and 9a as well as propellane 18 adopt binding poses at the σ1 receptor, which result in energetic values correlating well with their different σ1 affinities. The affinity of the ligands is enthalpy driven. The additional interactions of the carbamate moiety of anti-5 with the σ1 receptor protein cannot compensate the suboptimal orientations of the rigid propellane and its N-benzyl moiety within the σ1 receptor-binding pocket, which explains the higher σ1 affinity of the unsubstituted azapropellane 9a.

Entities:  

Keywords:  X-ray crystal structures; azapropellanes; molecular dynamics; molecular interactions; propellanes; rigidity; selectivity; stereochemistry; σ receptors

Year:  2021        PMID: 34073622     DOI: 10.3390/ijms22115685

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  54 in total

1.  Multiparametric scaling of diffraction intensities.

Authors:  Zbyszek Otwinowski; Dominika Borek; Wladyslaw Majewski; Wladek Minor
Journal:  Acta Crystallogr A       Date:  2003-04-25       Impact factor: 2.290

Review 2.  Sigma receptors and cancer: possible involvement of ion channels.

Authors:  Ebru Aydar; Christopher P Palmer; Mustafa B A Djamgoz
Journal:  Cancer Res       Date:  2004-08-01       Impact factor: 12.701

3.  Synthesis and Structure-Affinity Relationships of Spirocyclic Benzopyrans with Exocyclic Amino Moiety.

Authors:  Elisabeth Kronenberg; Frauke Weber; Stefanie Brune; Dirk Schepmann; Carmen Almansa; Kristina Friedland; Erik Laurini; Sabrina Pricl; Bernhard Wünsch
Journal:  J Med Chem       Date:  2019-04-12       Impact factor: 7.446

Review 4.  Targeting ligand-operated chaperone sigma-1 receptors in the treatment of neuropsychiatric disorders.

Authors:  Teruo Hayashi; Shang-Yi Tsai; Tomohisa Mori; Michiko Fujimoto; Tsung-Ping Su
Journal:  Expert Opin Ther Targets       Date:  2011-03-05       Impact factor: 6.902

5.  Interaction of new antidepressants with sigma-1 receptor chaperones and their potentiation of neurite outgrowth in PC12 cells.

Authors:  Tamaki Ishima; Yuko Fujita; Kenji Hashimoto
Journal:  Eur J Pharmacol       Date:  2014-02-05       Impact factor: 4.432

6.  Synthesis and pharmacological evaluation of like- and unlike-configured tetrahydro-2-benzazepines with the α-substituted benzyl moiety in the 5-position.

Authors:  Peer Hasebein; Bastian Frehland; Kirstin Lehmkuhl; Roland Fröhlich; Dirk Schepmann; Bernhard Wünsch
Journal:  Org Biomol Chem       Date:  2014-08-07       Impact factor: 3.876

Review 7.  The σ2 receptor: a novel protein for the imaging and treatment of cancer.

Authors:  Robert H Mach; Chenbo Zeng; William G Hawkins
Journal:  J Med Chem       Date:  2013-06-18       Impact factor: 7.446

8.  R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments.

Authors:  Enguerran Vanquelef; Sabrina Simon; Gaelle Marquant; Elodie Garcia; Geoffroy Klimerak; Jean Charles Delepine; Piotr Cieplak; François-Yves Dupradeau
Journal:  Nucleic Acids Res       Date:  2011-05-23       Impact factor: 16.971

9.  Sigma-2 Receptor/TMEM97 and PGRMC-1 Increase the Rate of Internalization of LDL by LDL Receptor through the Formation of a Ternary Complex.

Authors:  Aladdin Riad; Chenbo Zeng; Chi-Chang Weng; Harrison Winters; Kuiying Xu; Mehran Makvandi; Tyler Metz; Sean Carlin; Robert H Mach
Journal:  Sci Rep       Date:  2018-11-15       Impact factor: 4.379

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