| Literature DB >> 34069931 |
Binkai Xu1, Xiangdong Liu2, Bo Zhou1.
Abstract
Several new biased sampling methods were summarized for solution chemical potential calculation methods in the field of emulsion microencapsulation. The principles, features, and calculation efficiencies of various biased Widom insertion sampling methods were introduced, including volume detection bias, simulation ensemble bias, and particle insertion bias. The proper matches between various types of solution in emulsion and biased Widom methods were suggested, following detailed analyses on the biased insertion techniques. The volume detection bias methods effectively improved the accuracy of the data and the calculation efficiency by inserting detection particles and were suggested to be used for the calculation of solvent chemical potential for the homogeneous aqueous phase of the emulsion. The chemical potential of water, argon, and fluorobenzene (a typical solvent of the oil phase in double emulsion) was calculated by a new, optimized volume detection bias proposed by this work. The recently developed Well-Tempered(WT)-Metadynamics method skillfully constructed low-density regions for particle insertion and dynamically adjusted the system configuration according to the potential energy around the detection point, and hence, could be used for the oil-polymer mixtures of microencapsulation emulsion. For the macromolecule solutes in the oil or aqueous phase of the emulsion, the particle insertion bias could be applied to greatly increase the success rate of Widom insertions. Readers were expected to choose appropriate biased Widom methods to carry out their calculations on chemical potential, fugacity, and solubility of solutions based on the system molecular properties, inspired by this paper.Entities:
Keywords: Metadynamics; Widom insertion; chemical potential; emulsion microencapsulation; molecular simulation
Year: 2021 PMID: 34069931 PMCID: PMC8157608 DOI: 10.3390/molecules26102991
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Illustration of (a) the emulsion curing process, and (b) the typical O-phase (polystyrene-octane in fluorobenzene), and W2-phase (NaCl-polyvinyl alcohol in water) in double emulsion for microencapsulation.
Figure 2Calculation of the average Boltzmann factor with conventional Widom method.
Applications of the original Widom algorithm.
| Researchers | System and Force Field | Molecular Configuration Sampling | Insertion Position Sampling |
|---|---|---|---|
| Wu et al. [ | Solvent particles: ethylene oxide (200 molecules), ethanol (300 molecules) | MC: 105 molecular configurations were generated after a relaxation of 5 × 104 MC steps, and one configuration sample was taken out of every 100 configurations. | Sampling in a grid system whose grid volume was 0.5 Å3 |
| Xuan et al. [ | Ethanol (OPLS-UA) and carbon monoxide (DREIDING) at 298–323 K | MC: 5 × 104 molecular configurations were generated after a relaxation of 2.5 × 105 MC moves, using Towhee-7.02 software package [ | random sampling in simulation space |
| Gestoso et al. [ | Solvent: 1-magneto-4-polybutadiene chain with 30–300 monomer; Force field: COMPASS | Kinetic MC: molecular configurations during 10−4 s after relaxation | Sampling in a grid system whose grid volume was 0.3 Å3 |
| Albo et al. [ | 64,000 carbon dioxide molecules; | MD: 1000 molecular configurations during 0.75 ns were generated after a relaxation of 300 fs | random sampling in space with 2.5 × 106 insertion attempts for each configuration |
| Coskuner and Deiters [ | 216 water molecules (SPCE, original TIP5P, and improved TIP5P) and 2 xenon atoms (LJ) | MC: 9 × 106 molecular configurations were generated after a relaxation of 2.5 × 106 MC moves, using HYDRO [ | random sampling in space |
Figure 3Illustration of the volume detection bias method.
Application of the volume detection bias method.
| Researchers | Force Field | Molecular Configuration Sampling | Insertion Position Sampling |
|---|---|---|---|
| Khawaja et al. [ | OPLS | MC: For each of 24 independent systems, selected 250 molecular configurations. Simulated with the Gromacs open source software [ | Unbiased Widom sampling: 108 times; |
| Yang et al. [ | AMBER/OPLS | MC: For each of 20 independent systems, selected 250 molecular configurations | Unbiased Widom sampling: 107 times; |
Figure 4Operation of the inserted probe molecule for detailed average inside a grid. (a) Inserting a probe molecule. (b) Rotating the inserted probe molecule. (c) Translating the inserted probe molecule with a displacement that depends on the local Boltzmann factor.
Results of the volume detection bias method based on the two-level criterion and detailed average.
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| Unit | K | kg/m3 | kcal/mole | kcal/mole | kcal/mole | kcal/mole | kcal/mole | |
| H2O | 315 | 991 | −5.5414 ± 0.083 | −0.0594 | −0.3056 | −5.9064 ± 0.083 | −6.1244 | −3.6% |
| 374 | 958 | −5.2695 ± 0.127 | −0.0574 | −0.036 | −5.3629 ± 0.127 | −5.4828 | −2.2% | |
| 451 | 890 | −4.4862 ± 0.035 | −0.0523 | −0.061 | −4.5995 ± 0.035 | −4.7748 | −3.7% | |
| Ar | 320 | 416 | −0.0222 ± 0.0005 | −0.039 | 0 | −0.0612 ± 0.0005 | −0.0345 | −0.027 |
| 320 | 727 | 0.2176 ± 0.0015 | −0.0681 | 0 | 0.1495 ± 0.0015 | 0.1582 | 5.5% | |
| 320 | 894 | 0.4968 ± 0.0019 | −0.0837 | 0 | 0.4131 ± 0.0019 | 0.3988 | −3.6% |
Figure 5The excess chemical potential of liquid fluorobenzene at 1 atm and 320 K converges with the increase of configurations.
Figure 6The external potentials and system evolution of the WT-Metadynamics method.
Figure 7Chemical potential calculation with WT-Metadynamics in a high-density binary Lennard-Jones system (redrew with data in [22]).
Figure 8EECM method diagram. The blue hollow circles are solvent molecules, the red solid particles represent solute molecules, and the black dotted lines are cavities induced by the repulsive particle.
Figure 9Schematic diagram of various optimized Widom methods.
Applicability of various Widom insertion methods for dense systems.
| Method | Principle | Characteristics | Applicable System/Emulsion Microencapsulation Solution |
|---|---|---|---|
| Original Widom insertion method | Calculating the ensemble-averaged Boltzmann factor, 〈e(− | For low density systems, the accuracy is acceptable. The calculation is very time-consuming, and the chemical potential accuracy is low for dense systems. | Low-density system |
| Volume detection bias | Inserting of probe particles to evaluate whether the detection area is suitable for particle insertions, and make intensive insertion attempts in the appropriate detected areas | The number of insertions is reduced, the accuracy of the data and the calculation efficiency is effectively improved. Inserting detection particles requires a certain amount of calculation and reasonable evaluation means need to be applied. | Uniform system of medium and high density. |
| Simulation ensemble bias | The WT-Metadynamics applies additional external potentials to the simulation system to create appropriate insertion positions during the system evolution. Test particles are inserted at specific locations. | The algorithm skillfully constructs low-density regions for particle insertion and dynamically adjusts the system configuration according to the potential energy around the detection point. The implementation is complex. | Uniform or non-uniform complex system. |
| Particle insertion bias | EECM: changing the configuration near the insertion position by repulsing the nearby particles so that the test particle can be inserted successfully; | The success rate of a single molecule insertion increases and the number of insertion reduces, but perform a longer time calculation for every insertion. | Dense systems with macromolecular solutes or insoluble solutes. |